Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1093g00006 ATGGGCTTCCGGATTCAAACCAATGGGTCTCTCGAACTCGAAGAGATAAGACTATGGCTATGGCGGATACTCCATTTTACAGACGCAGTTGCAGTCTTGCAGAGTGAAGAAAAGATGGCACAAACGCTGGCAATGCCTGTGGCACCCTCACTCGCTGTCATCTGCAATGGCCACTTCTCCAACAGAGTCTCTTTCCCTGTTCTGAGCCCTCCCAACCCTAAGGTTCACGGGTTAAGCATCCAGTGCGTTCGTGTTGGGGGTGTGGAGATTCCAAACAACAAGCGAATTGAGTATTCTCTGCAGTACATTCATGGAGTTGGGAGGAGCAGAGCGCGACAAATCCTCTGTGACATCAACATGGACAACAAAATCACCAAGGACCTCTCTGAGGAGGAGCTCATTACTCTCAGAGATGAAGTGTCCAAATACATGATTGAAGGAGACTTGAGACGGTTCAATGCGATTAACATAAAGAGACTGAAGGATATCCAGTGCTACAGAGGAATTAGGCATATTCAGGGGCTTCCCTGTAGAGGACAGCGTACCAAGAACAATTGCAGGACCTTGAAGGGTAAGAAGGTTGCCATTGCAGGGAAGAAGAAAAAGTAA 609 0.4778 MGFRIQTNGSLELEEIRLWLWRILHFTDAVAVLQSEEKMAQTLAMPVAPSLAVICNGHFSNRVSFPVLSPPNPKVHGLSIQCVRVGGVEIPNNKRIEYSLQYIHGVGRSRARQILCDINMDNKITKDLSEEELITLRDEVSKYMIEGDLRRFNAINIKRLKDIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKK 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1093g00006 202 Gene3D 30s ribosomal protein s13, domain 2 152 202 IPR027437 -
Sebi1093g00006 202 ProSitePatterns Ribosomal protein S13 signature. 167 180 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sebi1093g00006 202 Pfam Ribosomal protein S13/S18 84 188 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sebi1093g00006 202 ProSiteProfiles Ribosomal protein S13 family profile. 85 191 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sebi1093g00006 202 NCBIfam 30S ribosomal protein S13 84 193 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sebi1093g00006 202 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 78 200 - -
Sebi1093g00006 202 FunFam 30S ribosomal protein S13 78 151 - -
Sebi1093g00006 202 FunFam 30S ribosomal protein S13 152 201 - -
Sebi1093g00006 202 Gene3D - 83 151 - -
Sebi1093g00006 202 SUPERFAMILY S13-like H2TH domain 83 194 IPR010979 GO:0003676
Sebi1093g00006 202 Hamap 30S ribosomal protein S13 [rpsM]. 82 198 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1093g00006 Sebi-Chr1093 89080 89840 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1093g00006 81 200 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 30.822 3.78e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1093g00006 K02952 - jcu:105638882 265.774