Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1092g00003 ATGACAAAGCGGAGGGCATTTCCACAGCAACAACCCACCAAACCCAAGCTTCACTTTATCTCGAAACCAGAAGATCTGGATCGTCTATTCTTCATGCATGACCATCCAACGGCCTTGATCACGCGTTTGACTGAGGCACAGATTTTGAAGGATTTAGGGTTTGGATTGTTGGGCAGTGTGAGTGGTATCAGCAAAGCAACCATGAATATGATGCGACGGCTGAAGAGCATTGCATCTGGGAGGACTTCAGTTTCTTCAGATCCTATGATAAGGTTTCAGAGTCTAGACATGGGTCAGTTATTACTAAGGCATGAAATGGCAGGGGATTCTAACACCAAAAGAGCTAAGTTTGATCAAGAAACTGAAGTGAAGGTCAATGAGGAAACAAATACTTTAGACAACAAAGATCAGGAGCAGCATGTGGATGTACCAAAAGAAGCAACAGTTGGCACATCCAATGTATCTACAGTAGCTAGAACTGAGAAGTCAGGTTTCGATGAACTTCCAAAGGAATTACATGAAATGAAAATTAGAGATGAGAAAAGCAAAATCAACAATGAAAAGGATATGGAAGCAACTATATTGAGTGGTAATGGAACAGAAGCTGGTCAAATAATTACAACTGCTATTGGTGGTCGAGATGGACAACCAAAGCAGACAATCTCGTACATGGCTGAACGTGTTGTTGGGAGTGGTTCTTTTGGTGTTGTTTTTCAGGCTAAGTGCCTTGAAACTGGTGAAGCAGTTGCCATAAAGAAGGTGCTGCAAGACAAGAGATATAAGAATAGGGAACTCCAGGTTATGCGCACGGTTGATCATCCTAACATTGTTAAACTAAAGCACTGTTTCTTTTCAACTACCGAGAAAGATGAGTTGTACCTTAACCTGGTTTTGGAGTATGTACCTGAAACTGTCTACAAAGCTTCAAAGCACTATATTAGGATGCACCAACATATGCCTATGATTTATGTGCAACTGTATACATACCAGATATGTCGCGCATTAAATTATTTACATGAAGTGCTTGGCGTCTGCCATCGTGACATCAAACCCCAGAACCTATTGGTTAATCCCCAGACTCATCAGTTAAAGATATGTGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGTGAACCCAACATATCATACATATGCTCTCGATATTACAGAGCTCCAGAACTTATCTTTGGAGCAACTGAATACACAACTGCTATTGATATGTGGTCTGTTGGTTGTGTTTTGGCTGAGCTCCTCCTAGGACAGCCATTGTTTCCTGGAGAGAGTGGGGTTGATCAGTTAGTGGAGATCATTAAGATCTTGGGAACACCAACCAGAGAAGAAATAAGGTGCATGAATCCAAACTACAATGAATTTAAGTTTCCTCAGATTAAAGCGCATCCATGGCATAAGGTTTTTCACAAGAGAATGCCACCTGAAGCAGTGGATCTTGTGTCGAGGCTGCTTCAGTATTCACCAAATCTACGTTGCACTGCTTTGGCTGCATGTGCACACCCATTCTTCAATGATCTGCGAGACCCAAATGCACGCTTGCCAAACGGACAACCACTACCTCCCCTGTTCAATTTCACACCTCAAGAACTGGCAAATGCACCTGATGAGTTGCGACAACGTCTTATCCCTGAGCATGCAAGGAGCTGA 1659 0.4262 MTKRRAFPQQQPTKPKLHFISKPEDLDRLFFMHDHPTALITRLTEAQILKDLGFGLLGSVSGISKATMNMMRRLKSIASGRTSVSSDPMIRFQSLDMGQLLLRHEMAGDSNTKRAKFDQETEVKVNEETNTLDNKDQEQHVDVPKEATVGTSNVSTVARTEKSGFDELPKELHEMKIRDEKSKINNEKDMEATILSGNGTEAGQIITTAIGGRDGQPKQTISYMAERVVGSGSFGVVFQAKCLETGEAVAIKKVLQDKRYKNRELQVMRTVDHPNIVKLKHCFFSTTEKDELYLNLVLEYVPETVYKASKHYIRMHQHMPMIYVQLYTYQICRALNYLHEVLGVCHRDIKPQNLLVNPQTHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDMWSVGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIRCMNPNYNEFKFPQIKAHPWHKVFHKRMPPEAVDLVSRLLQYSPNLRCTALAACAHPFFNDLRDPNARLPNGQPLPPLFNFTPQELANAPDELRQRLIPEHARS 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1092g00003 552 SMART serkin_6 223 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1092g00003 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 344 356 IPR008271 GO:0004672|GO:0006468
Sebi1092g00003 552 ProSitePatterns Protein kinases ATP-binding region signature. 229 253 IPR017441 GO:0005524
Sebi1092g00003 552 FunFam Shaggy-related protein kinase kappa 303 551 - -
Sebi1092g00003 552 CDD STKc_GSK3 218 510 IPR039192 -
Sebi1092g00003 552 Pfam Protein kinase domain 223 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1092g00003 552 SUPERFAMILY Protein kinase-like (PK-like) 222 534 IPR011009 -
Sebi1092g00003 552 FunFam Glycogen synthase kinase-3 beta 207 302 - -
Sebi1092g00003 552 Gene3D Phosphorylase Kinase; domain 1 208 302 - -
Sebi1092g00003 552 ProSiteProfiles Protein kinase domain profile. 223 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1092g00003 552 Gene3D Transferase(Phosphotransferase) domain 1 303 551 - -
Sebi1092g00003 552 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 187 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1092g00003 Sebi-Chr1092 73841 78517 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1092g00003 229 510 Core Cell Cycle Gene Families AT3G48750 36.426 1.32e-54 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Sebi1092g00003 Pkinase 1.4e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1092g00003 K27414 - gmx:100811346 848.58