Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1092g00001 ATGGCTGAGAATTTTGAGGCAAATGGTTTGAGAAGGAGCAGGGAAGAAGATCAAAGCAGATCTGGTAGTGATAACATGGATGGTATTTCCGGTGATGAACAAGATGCTGCCGACAAGCCTCCTAGAAAGAAGCGTTATCACCGACACACTCCTCAGCAGATACAAGAGCTTGAAGCGAGTGTCCTCACCCAGATGAGAAGCAAGGCTGGAACTGAGCAAAAGGCTTTGCTTGGAAACAAGGCAGGTGAAGTTTTGGTTCCAAAATCGGAGGACCCAAATGAAGGTTTCTTATGGGCCATGAAACTTTTTTTTTCTTTTTGGTGGTTGTTTGTACAATTGTACCAGACCCAATTGGAGCGCCATGAGAACACGCTGCTTAGGCAAGAGAATGATAAGCTTAGAGCTGAGAACATGTCTATTAGGGAAGCTATGAGGAATCCCATGTGTTCCAATTGTGGTGGTCCAGCTATGATTGGTGAGATTTCACTAGAGGAACAACATCTTCGGATTGAGAATGCCCGGTTAAAAGATGAACTGGACCGATTGGAGCTTGGTGTTGGGGGCAATGGTTTTGGTGGGATGAGCACTACTGTGGCTGCAACATTACCTTTGGGGCCTGATTTTGGGGTGGGGATGTCAAATAACCCTTTAGCAATGGTGTCTCCTCCAACTAGACCAACACCTGTGGTGACTGGCTATGATAGATCAATAGAGAGGTCTATGTTTCTAGAGCTTGCTTTAGCTGCTATGGATGAGTTGGTGAAAATGGCACAAACTGGTGATCCTCTTTGGATCAGGAGTATGGAAGGGGGAAAGGAAATTCTGAACCATGAAGAATACATGAGAACATTCACTCCTTGCATTGGCTTAAGACCCAATGGTTTTGTCTCAGAAGCTTCTAGAGAGACTGGGATGGTCATCATAAACAGCTTAGCACTTGTTGAGACTCTTATGGATGCGATGCATGCGGAAGTTCATGTTATTTCACCTCTGGTTCCGGTTCGTGAGGTGAATTTCCTGCGGTTTTGCAAGCAGCACGCAGAAGGGGTATGGGCTGTGGTTGATGTATCCATAGATACCATAAGAGAAAATTCCGGCGCGCCTAGTTTTGTGAACTGTAGGAGGCTTCCTTCTGGTTGTGTGGTGCAAGATATGCCTAATGGTTACTCCAAGTATATTTTAGTTGGGGTACTATTCACCATGCAGCTACCAAAGTGA 1218 0.454 MAENFEANGLRRSREEDQSRSGSDNMDGISGDEQDAADKPPRKKRYHRHTPQQIQELEASVLTQMRSKAGTEQKALLGNKAGEVLVPKSEDPNEGFLWAMKLFFSFWWLFVQLYQTQLERHENTLLRQENDKLRAENMSIREAMRNPMCSNCGGPAMIGEISLEEQHLRIENARLKDELDRLELGVGGNGFGGMSTTVAATLPLGPDFGVGMSNNPLAMVSPPTRPTPVVTGYDRSIERSMFLELALAAMDELVKMAQTGDPLWIRSMEGGKEILNHEEYMRTFTPCIGLRPNGFVSEASRETGMVIINSLALVETLMDAMHAEVHVISPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRENSGAPSFVNCRRLPSGCVVQDMPNGYSKYILVGVLFTMQLPK 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1092g00001 405 MobiDBLite consensus disorder prediction 1 53 - -
Sebi1092g00001 405 CDD START_ArGLABRA2_like 239 391 - -
Sebi1092g00001 405 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 39 320 IPR042160 -
Sebi1092g00001 405 Coils Coil 111 146 - -
Sebi1092g00001 405 ProSiteProfiles START domain profile. 235 405 IPR002913 GO:0008289
Sebi1092g00001 405 Pfam START domain 321 395 IPR002913 GO:0008289
Sebi1092g00001 405 MobiDBLite consensus disorder prediction 8 22 - -
Sebi1092g00001 405 Coils Coil 165 185 - -
Sebi1092g00001 405 SUPERFAMILY Bet v1-like 237 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1092g00001 Sebi-Chr1092 38072 41218 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1092g00001 3 395 Homeobox Transcription Factor Family AT4G00730 52.009 4.86e-135 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1092g00001 K09338 - qsu:111991611 508.064