Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi108g00058 ATGGTGCACTATGAGGGTTTGTTTCTAAGGAAGTTCCCAGCCGTGCATGTGGTGAAAAAGAGTGGGTGGAAAGATCTGGAGCAATCAGGTGGCATAGAAGACGGAGATCAACAGCAAAAGGCATTTGATGATGCAGATTACTCATCCTCAGCGATTGAAGGCAAAAGCAACTCAAAGAAGAGGAGGGATATTAAGGATGAGGATGAGGATGGAGAGGACAGGGAGGATATTACCTCGTTAAAGAAGCCGCGGGTTGTTTGGTCTGTTGAGCTTCATCAACAGTTCATGGCTGCTGTGAATCAACTAGGAATTGATAAGGCTGTTCCTAAAAAGATTCTGGAATTGATGAATGTCCCTGGGCTCACTAGAGAAAATGTTGCTAGCCACCTCCAGCAGCAGAGCAACTTTAATAACTCATTCATCAGCTCACAAGATTCAACATTTGGGGCTACTTCAATAAATGGAATAGATCTGCAAACTCTTCCAGTTGCTGGCCAGCTCCAAGCACAAAGTCTAGCCAAGCTTCAAGCAGCAGGACTCGGCAGATCAATTGCAAAAGCAGGGTATGAAATTAAGCAAGGAAATCAAGGTGGCAACACCTTGGAGAAAACTGATGCAACTGGTGAAAATGTAAACGGGGAAGATGCTATTGATGTTGATGACAATGATGAAACTATTGATTGGATTTTGAAGCAGTAA 699 0.4363 MVHYEGLFLRKFPAVHVVKKSGWKDLEQSGGIEDGDQQQKAFDDADYSSSAIEGKSNSKKRRDIKDEDEDGEDREDITSLKKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQQQSNFNNSFISSQDSTFGATSINGIDLQTLPVAGQLQAQSLAKLQAAGLGRSIAKAGYEIKQGNQGGNTLEKTDATGENVNGEDAIDVDDNDETIDWILKQ 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi108g00058 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 138 IPR017930 -
Sebi108g00058 232 FunFam Two-component response regulator 78 137 - -
Sebi108g00058 232 NCBIfam myb-like DNA-binding domain, SHAQKYF class 82 132 IPR006447 GO:0003677
Sebi108g00058 232 MobiDBLite consensus disorder prediction 26 41 - -
Sebi108g00058 232 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 40 174 IPR044841 GO:0003700|GO:0006355
Sebi108g00058 232 SUPERFAMILY Homeodomain-like 80 132 IPR009057 -
Sebi108g00058 232 MobiDBLite consensus disorder prediction 26 77 - -
Sebi108g00058 232 Gene3D - 78 137 - -
Sebi108g00058 232 Pfam Myb-like DNA-binding domain 84 132 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi108g00058 Sebi-Chr108 1889387 1890762 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi108g00058 16 191 Response Regulator Gene Family AT3G16857 53.991 1.29e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Sebi108g00058 Myb_DNA-binding 5.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi108g00058 - K14491 gmx:100809583 214.927