Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi108g00041 ATGGGTGCACCTAAAGTTGCCAGATGTGGAAAAACAAGGAAATCAAAGGTTAAGAATTCAATTTCTAGGCCAGCAGGCAAAGTGGTTAAATTTGATTTGACTGATCTACAATGGACCAATAACATTCCAGAGTGTCCAGTATACCACCCATCAGAAAAGGAGTTTGAGGACCCTTTTCTATATCTACAGAACATTGCTCCAGAGGCATCTAAATTTGCTGCCTCTACTCCTGCTGTTGTTGTCTTGACCAAAGAGAAAAAGGACTTCAAGTTTGAAACTAATGTACAGCCTCTTGGGATTTCTGAGTGGAATGAGAAAGACATAGTAACCTTTTCTATGAGAGGAAGGAAATACACATATCATGAATTTGAGGCTCTGGCAAATGATGCTTTTCTCAGTAGATTTTACAGTTTTGGGAGTCTTTCATCTTCATATGTGGAAAAGGAGTTCTGGCATGAGATGGTGTATGGAGAGAAGGGAACGGTTGAGTATGGAGTCAATATTGAGGGTAGTGCCTTTTCATGTGATCCTGATGACAAGCTTGGAAAAAGCAAATGGAATTTGAAGAATTTCTCACGGCTGCCACAATCCACATTGCGATTAGTTGACAAGGAAATTCCAGGAATAACTGATCCTATGCTTTACATTGGGATGCTGTTCAGCATGTTTGCATGGCATGTGGAAGATCACTATCTATACAGCATAAATTATCACCATTCAGGTGCTAATAAAATTTGGTATGGAGTGCCTTCCCATGAAGCCTCTCAATTTGAAAATGTTGTCTTACATAATGTGTATTGCAATAAAATCTTACCAAAACATGGAGAAGATGGGGCTTTCCAACTTCTTGCACATAAAACAACCATGCTCCCTCCAATTGTCTTGCTACAAAATGATGTGGCAGTTTACAAGGCTATCCAGAAGCCAGGAGAGTTTGTCATTACCTTTCCTAAAGCATATCATGCTGGATTTAGTACTGGTTTTAACTGTGGAGAAGCAGTGAACTTTGCTATTGGTGATTGGTTTCCATTAGGGGCTGAAGCTAGTAAACGTTATGCACATCTCAGAATGTTTCCTATTATTCCACATGAGGAACTTCTTTGTAAAGAGGCAATGCAGATTTACAAGTCCTTAAAAGTCAGAGGCCCTTTTGAGACTGAACAGTTCAATAGAGTGTTCAAGTTCTTCAAATACCATAGGTACCCTGATATGCCATGA 1218 0.3957 MGAPKVARCGKTRKSKVKNSISRPAGKVVKFDLTDLQWTNNIPECPVYHPSEKEFEDPFLYLQNIAPEASKFAASTPAVVVLTKEKKDFKFETNVQPLGISEWNEKDIVTFSMRGRKYTYHEFEALANDAFLSRFYSFGSLSSSYVEKEFWHEMVYGEKGTVEYGVNIEGSAFSCDPDDKLGKSKWNLKNFSRLPQSTLRLVDKEIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKIWYGVPSHEASQFENVVLHNVYCNKILPKHGEDGAFQLLAHKTTMLPPIVLLQNDVAVYKAIQKPGEFVITFPKAYHAGFSTGFNCGEAVNFAIGDWFPLGAEASKRYAHLRMFPIIPHEELLCKEAMQIYKSLKVRGPFETEQFNRVFKFFKYHRYPDMP 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi108g00041 405 ProSiteProfiles JmjC domain profile. 183 353 IPR003347 -
Sebi108g00041 405 PANTHER LYSINE-SPECIFIC DEMETHYLASE 38 376 - -
Sebi108g00041 405 SUPERFAMILY Clavaminate synthase-like 114 375 - -
Sebi108g00041 405 Pfam jmjN domain 46 72 IPR003349 -
Sebi108g00041 405 Gene3D Cupin 45 392 - -
Sebi108g00041 405 Pfam JmjC domain, hydroxylase 213 336 IPR003347 -
Sebi108g00041 405 SMART JmjN_1 44 77 IPR003349 -
Sebi108g00041 405 SMART cupin_9 183 353 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi108g00041 Sebi-Chr108 1589754 1592079 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi108g00041 41 390 JUMONJI Transcription Factor Family AT2G34880 32.854 1.71e-56 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sebi108g00041 JmjC 3.4e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi108g00041 - - lang:109363426 601.282