Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi108g00010 ATGGACTCTACATTGGACTTGAATCCTTTTAGTGACGACAAACATGAAATAATTGAAGATTTCCTTCCAAACATGGAGGAGGATGGCGATACGGCTGTGTATAATAGCTACATTGAGGCAGCTGAGAATTCTATTTCTACCAAGACCATATTTGGGGAGGCACACTTCACCATTTTGGGTGAATCTGACATCAAGCAGCTTCAAGAGGCTGATATCAATCAAGTTTCAACCGTTCTTTTGATATCAAAATTTGTTGCTTGCCTTTTGCTCCATCACTATGAGTGGAGTGTGAATAAAGTGATCGAAGCATGGATTGATAATGAAGAAAGAGTTCGCAACGCTGTAGGGTTGCTTAAACAACCCCAGGTAAATTTTTCTAGCTCAGAAATTTTCATGTGTGGGATCTGTTTCGAAACCCTTTGTGGTGATAAGATTAGGTTAGCAGAGTGTGGACATCCATTTTGCATGATTTGTTGGATGCGCTATGTGGATACAAAGATTGACGAAGGTCCTTATAAGTGCTTGACACTTAGATGCCCCGAACCCTTTTGTGATGCAGCTATGGATGGAGACATGGTTCACAAACTTGCAAGTGAATCAAGTATGAAAAGGTACGATCATTTTTTGTTCCGATCTTACGTGGAAAACAATAAGAAGATTAAGTGGTGTCCTGCTCCTGCTTGTGGGAATGCTGTAAGTTTTGAAGCTGATGGTTATAGAAAAAATTTCGATGTTACATGCCTTTGTTATCATAGTTTTTGCTGGAGATGTGGGGAAGAAGCTCATAGGCCTGTGGATTGTGAAACTGCACACCAATGGATAACAAAGAATATGTCTAAATCTGAGAATGCTGATTGGCTTGTTGCTCATACTAAACCATGTCCTCAGTGCAAGAAACCCATTGAGAGAAATGGGGGGTGCAAAAGAATAAGGTGCAACTGTGGATTTCAATTTTGTTGGTTTTGTCTTGGTGATTGGCTTGCTTCTATATGTTGCAAATGTCATACAATTCAATTTCAAGAGACTAGCAAAGAGGAACTAAAAAGTAAGATGTCAAGGGGTTATTTTGATAGGTTGTTTCAAAGGCCTTCAACTGATTTTAATTTTATAATTGAGGCTTGGAAACAAGTGATTGAATGTAAAGGGGTACTAAAATGGTGTTATACATATGGATATTATCTCCCTGATGATATAAAGGTCAAGAAGGACTTTTTTGAGTACATCCAACATAAAGCTGAGGTTACTTTCGAAAAGCTTGATCAATGTGTAGGAATGGAACTGGAAGGGCATCTAAATGTTAAGCGAAAAGATGACTTAAATGATTTTCGTTTGAAGGTAGTCCAATTGACTAATGTGACCAAGAATTATTTTGACAAGCTGGTGAAAGCGTTAGAGGATGGCCTAGCTGATGTGCACGTGAATAACAACATGAGGGTGAAAAGAAAATCAACTGAGATAGGTGAGACCTCTAATCAAAGGGGGACCAAGAGAATAATTACCATTGATGGACTGACCGATGATGATCTTTGGCAATGTGAGGCATGTGGTCATTACAATTTTGCCGCTTCTCCTGTATGTCAGGATACTAATTGCAGACAATACTCTGATTAA 1611 0.3892 MDSTLDLNPFSDDKHEIIEDFLPNMEEDGDTAVYNSYIEAAENSISTKTIFGEAHFTILGESDIKQLQEADINQVSTVLLISKFVACLLLHHYEWSVNKVIEAWIDNEERVRNAVGLLKQPQVNFSSSEIFMCGICFETLCGDKIRLAECGHPFCMICWMRYVDTKIDEGPYKCLTLRCPEPFCDAAMDGDMVHKLASESSMKRYDHFLFRSYVENNKKIKWCPAPACGNAVSFEADGYRKNFDVTCLCYHSFCWRCGEEAHRPVDCETAHQWITKNMSKSENADWLVAHTKPCPQCKKPIERNGGCKRIRCNCGFQFCWFCLGDWLASICCKCHTIQFQETSKEELKSKMSRGYFDRLFQRPSTDFNFIIEAWKQVIECKGVLKWCYTYGYYLPDDIKVKKDFFEYIQHKAEVTFEKLDQCVGMELEGHLNVKRKDDLNDFRLKVVQLTNVTKNYFDKLVKALEDGLADVHVNNNMRVKRKSTEIGETSNQRGTKRIITIDGLTDDDLWQCEACGHYNFAASPVCQDTNCRQYSD 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi108g00010 536 SMART ibrneu5 203 267 IPR002867 GO:0008270
Sebi108g00010 536 SMART ibrneu5 276 332 IPR002867 GO:0008270
Sebi108g00010 536 SUPERFAMILY RING/U-box 286 329 - -
Sebi108g00010 536 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 219 IPR013083 -
Sebi108g00010 536 ProSiteProfiles TRIAD supradomain profile. 129 346 IPR044066 -
Sebi108g00010 536 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 63 387 IPR031127 GO:0004842|GO:0016567
Sebi108g00010 536 ProSiteProfiles Zinc finger RING-type profile. 133 180 IPR001841 -
Sebi108g00010 536 FunFam RBR-type E3 ubiquitin transferase 127 217 - -
Sebi108g00010 536 SUPERFAMILY RING/U-box 204 274 - -
Sebi108g00010 536 SUPERFAMILY RING/U-box 127 215 - -
Sebi108g00010 536 ProSiteProfiles Zinc finger CCHC-type profile. 254 267 IPR001878 GO:0003676|GO:0008270
Sebi108g00010 536 Gene3D - 263 359 - -
Sebi108g00010 536 CDD BRcat_RBR_ANKIB1 211 276 - -
Sebi108g00010 536 Pfam IBR domain, a half RING-finger domain 203 267 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi108g00010 Sebi-Chr108 645479 647188 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi108g00010 53 527 ARIADNE family AT1G65430 41.954 1.69e-143 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi108g00010 K11968 - gmx:100801350 507.294