Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi108g00009 ATGGACTCTACATTGGACTTGAATCCTTTTAGTGACGACAAACATGAAATAATTGAAGATTTCCTTCCAAACATGGAGGAGGATGGCGATACGGCTGTGTATAATAGCTACATTGAGGCAGCTGAGAATTCTATTTCTACCAAGACCATATTTGGGGAGGCACACTTCACCATTTTGGGTGAATCTGACATCAACTCAGAAATTTTCATGTGTGGGATCTATTTTGAAACCCTTTTTGGTGATAAGATTGGGTCAGCAGAGTGTGGACATCCATTTTGCATGATTTGTTGGATGCGCTATGTGGATACGAAGATTGACGAGGGTCCTTATAAGTGCTTGACACTTAGATGCCCCGAACCCTTTTGTGGTGCAGTTGTGGATGGAGACATGGTTCACAAACTTGCAAGTGAATCAAGTATGAAAAGTTTTTGTTGGAGATGTGGGGAAGAATCTCATAGGCCTGTGGATTGTGAAACTGCACACCAATGGATAACAAAGAATAAGTCTAAATCTGAGAATGCTGATTGGCTTGTTGCTCATACTAAACCATGTCCTCAGTGCAAGAAACCCATTGAGAGAAATGGGGGGTGCAAAAGAATAAGAGGGGTACTAAAATGGTGTTATACATATGGATATTATCTCCCTAATGATATAAAGGTCAAGAAGGACTTTTTTGAGTACATCCAACATAAGGCTGAGGTTACTTTCGAAAAGCTTGATCAATGTGTAGGAATGGAACTGGAAGGGAATCTAAATGTTAAGCGAAAAGATGACTTAAATGATTTTTGTTTGAAGGTAGTCCAATTGACTAATGTGACCAAGAATTATTTTGACAAGCTGGTGAAAGCGTTAGAGGATGGCCTAGCTGATGTGCACGTGAATAACAACATGAGGGTGAAAAGAAAATCAACTGAGATAGGTGAGACCTCTAATCAAAGGGGGACCAAGAGAATAATTACCATTGATGGACTGACCGATGATGATCTTTGGCAATGTGAGGCATGTGGTCATTACAATTTTGCCGCTTCTCCTGTATGTCAGGATACTAATTGCAGACAATACTCTGATTAA 1071 0.4006 MDSTLDLNPFSDDKHEIIEDFLPNMEEDGDTAVYNSYIEAAENSISTKTIFGEAHFTILGESDINSEIFMCGIYFETLFGDKIGSAECGHPFCMICWMRYVDTKIDEGPYKCLTLRCPEPFCGAVVDGDMVHKLASESSMKSFCWRCGEESHRPVDCETAHQWITKNKSKSENADWLVAHTKPCPQCKKPIERNGGCKRIRGVLKWCYTYGYYLPNDIKVKKDFFEYIQHKAEVTFEKLDQCVGMELEGNLNVKRKDDLNDFCLKVVQLTNVTKNYFDKLVKALEDGLADVHVNNNMRVKRKSTEIGETSNQRGTKRIITIDGLTDDDLWQCEACGHYNFAASPVCQDTNCRQYSD 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi108g00009 356 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 47 235 IPR031127 GO:0004842|GO:0016567
Sebi108g00009 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 153 IPR013083 -
Sebi108g00009 356 ProSiteProfiles Zinc finger CCHC-type profile. 144 157 IPR001878 GO:0003676|GO:0008270
Sebi108g00009 356 Gene3D - 200 291 - -
Sebi108g00009 356 Gene3D - 154 199 - -
Sebi108g00009 356 ProSiteProfiles TRIAD supradomain profile. 67 241 IPR044066 -
Sebi108g00009 356 SUPERFAMILY RING/U-box 176 208 - -
Sebi108g00009 356 SUPERFAMILY RING/U-box 66 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi108g00009 Sebi-Chr108 602749 604455 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi108g00009 182 347 ARIADNE family AT1G65430 38.323 2.22e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi108g00009 K11968 - cpap:110813496 141.354