LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi108g00009	ATGGACTCTACATTGGACTTGAATCCTTTTAGTGACGACAAACATGAAATAATTGAAGATTTCCTTCCAAACATGGAGGAGGATGGCGATACGGCTGTGTATAATAGCTACATTGAGGCAGCTGAGAATTCTATTTCTACCAAGACCATATTTGGGGAGGCACACTTCACCATTTTGGGTGAATCTGACATCAACTCAGAAATTTTCATGTGTGGGATCTATTTTGAAACCCTTTTTGGTGATAAGATTGGGTCAGCAGAGTGTGGACATCCATTTTGCATGATTTGTTGGATGCGCTATGTGGATACGAAGATTGACGAGGGTCCTTATAAGTGCTTGACACTTAGATGCCCCGAACCCTTTTGTGGTGCAGTTGTGGATGGAGACATGGTTCACAAACTTGCAAGTGAATCAAGTATGAAAAGTTTTTGTTGGAGATGTGGGGAAGAATCTCATAGGCCTGTGGATTGTGAAACTGCACACCAATGGATAACAAAGAATAAGTCTAAATCTGAGAATGCTGATTGGCTTGTTGCTCATACTAAACCATGTCCTCAGTGCAAGAAACCCATTGAGAGAAATGGGGGGTGCAAAAGAATAAGAGGGGTACTAAAATGGTGTTATACATATGGATATTATCTCCCTAATGATATAAAGGTCAAGAAGGACTTTTTTGAGTACATCCAACATAAGGCTGAGGTTACTTTCGAAAAGCTTGATCAATGTGTAGGAATGGAACTGGAAGGGAATCTAAATGTTAAGCGAAAAGATGACTTAAATGATTTTTGTTTGAAGGTAGTCCAATTGACTAATGTGACCAAGAATTATTTTGACAAGCTGGTGAAAGCGTTAGAGGATGGCCTAGCTGATGTGCACGTGAATAACAACATGAGGGTGAAAAGAAAATCAACTGAGATAGGTGAGACCTCTAATCAAAGGGGGACCAAGAGAATAATTACCATTGATGGACTGACCGATGATGATCTTTGGCAATGTGAGGCATGTGGTCATTACAATTTTGCCGCTTCTCCTGTATGTCAGGATACTAATTGCAGACAATACTCTGATTAA	1071	0.4006	MDSTLDLNPFSDDKHEIIEDFLPNMEEDGDTAVYNSYIEAAENSISTKTIFGEAHFTILGESDINSEIFMCGIYFETLFGDKIGSAECGHPFCMICWMRYVDTKIDEGPYKCLTLRCPEPFCGAVVDGDMVHKLASESSMKSFCWRCGEESHRPVDCETAHQWITKNKSKSENADWLVAHTKPCPQCKKPIERNGGCKRIRGVLKWCYTYGYYLPNDIKVKKDFFEYIQHKAEVTFEKLDQCVGMELEGNLNVKRKDDLNDFCLKVVQLTNVTKNYFDKLVKALEDGLADVHVNNNMRVKRKSTEIGETSNQRGTKRIITIDGLTDDDLWQCEACGHYNFAASPVCQDTNCRQYSD	356

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi108g00009	356	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	47	235	IPR031127	GO:0004842\|GO:0016567
	Sebi108g00009	356	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	65	153	IPR013083	-
	Sebi108g00009	356	ProSiteProfiles	Zinc finger CCHC-type profile.	144	157	IPR001878	GO:0003676\|GO:0008270
	Sebi108g00009	356	Gene3D	-	200	291	-	-
	Sebi108g00009	356	Gene3D	-	154	199	-	-
	Sebi108g00009	356	ProSiteProfiles	TRIAD supradomain profile.	67	241	IPR044066	-
	Sebi108g00009	356	SUPERFAMILY	RING/U-box	176	208	-	-
	Sebi108g00009	356	SUPERFAMILY	RING/U-box	66	144	-	-

Showing 1 to 8 of 8 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi108g00009	Sebi-Chr108	602749	604455	Tandem

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi108g00009	182	347	ARIADNE family	AT1G65430	38.323	2.22e-24	102

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi108g00009	K11968		-	cpap:110813496	141.354

Showing 1 to 1 of 1 entries