Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi108g00008 ATGGACTCTACATTGGACTTGAATCCTTTTAGTGACGAAAAACATGAAATAATTGAAGATTTCCTTCCAAACATGGAGGAGGATGGCGATACGGCTGTGTATAATACCTACATTGAGGCAGCTGAGAATTCTATTTCTACCAAGACCATATTTGGGGAGGCACACTTCACCATTTTGGGTGAATCTGACATCAAGCAGCTTCAAGAGGCTGATATCAATCAAGTATCAACCGTTCTTTTGATATCAAAATTTGTTGCTTGCCTTTTGCTCCATCACTATGAGTGGAGTGTGAATAAAGTGATCGAAGCATGGATTGATAATAAAGAAAGAGTTCGCAACGTTGTAGGGTTGCTTAAACAACCCCAGGTAAATTTTTCTAGCTCAGAAATTTTCATGTGTGGGATCTGTTTCGAAACCCTTTGTGGTGATAAGATTAGGTCAGCAGAGTGTGGACATCCATTTTGCATGATTTGTTGGATGCGCTATGTGGATACGAAGATTGACGAGGGTCCTTATAAGTGCTTGACACTTAGATGCCCCGAACCCTTTTGTGGTGCAGTTGTGGATGGAGACATGGTTCACAAACTTGCAAGTGAATCAAGTATGAAAAGGTACGATCATTTTTTGTTCCGATCTTACGTGGAAAACAATAAGAAGATTAAGTGGTGTCCTGCTCCTGCTTGTGGATGTGGGGAAGAAGCTCATAGGCCTGTGGATTGTGAAACTGCACACCAATGGATAACAAAGAATAAGTCTAAATCTGAGAATGCTGATTGGCTTGTTGCTCATACTAAACCATGTCCTCAGTGCAAGAAACCCATTGAGAGAAATGGGGGGTGCAAAAGAATAAGAGGGGTACTAAAATGGTGTTATACATATGGATATTATCTCCCTGATGATATAAAGGTCAAGAAGGACTTTTTTGAGTACATCCAACATAAGGCTGAGGTTACTTTTGAAAAGCTTGATCAATGTGTAGGAATGGAACTGGAAGGGCATATAAATGTTAAGCAAAAAGATGACTTAAATGATTTGCATTTGAAGGTAGTCCAATTGACTAATGTGACCAAGAATTATTTTGACAAGCTGGTGAAAGCGTTAGAGGATGGCCTAGCTGATGTGCACGTCAATAACAACATGAGGGTAAAAAGAAAATCAACTGAGATAGGTGAGACCTCTAATCAAAGGGGGACCAAGAGAATAATTACCATTGATGGACTGACCGATGATGATCTTTGGCAATGTGAGGCATGTGGTCATTACAATTCTGTCGCTTCTCCTGTATGTTAG 1290 0.4016 MDSTLDLNPFSDEKHEIIEDFLPNMEEDGDTAVYNTYIEAAENSISTKTIFGEAHFTILGESDIKQLQEADINQVSTVLLISKFVACLLLHHYEWSVNKVIEAWIDNKERVRNVVGLLKQPQVNFSSSEIFMCGICFETLCGDKIRSAECGHPFCMICWMRYVDTKIDEGPYKCLTLRCPEPFCGAVVDGDMVHKLASESSMKRYDHFLFRSYVENNKKIKWCPAPACGCGEEAHRPVDCETAHQWITKNKSKSENADWLVAHTKPCPQCKKPIERNGGCKRIRGVLKWCYTYGYYLPDDIKVKKDFFEYIQHKAEVTFEKLDQCVGMELEGHINVKQKDDLNDLHLKVVQLTNVTKNYFDKLVKALEDGLADVHVNNNMRVKRKSTEIGETSNQRGTKRIITIDGLTDDDLWQCEACGHYNSVASPVC 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi108g00008 429 Gene3D - 236 282 - -
Sebi108g00008 429 Gene3D - 283 374 - -
Sebi108g00008 429 ProSiteProfiles Zinc finger RING-type profile. 133 180 IPR001841 -
Sebi108g00008 429 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 63 324 IPR031127 GO:0004842|GO:0016567
Sebi108g00008 429 FunFam RBR-type E3 ubiquitin transferase 127 217 - -
Sebi108g00008 429 SUPERFAMILY RING/U-box 127 215 - -
Sebi108g00008 429 SUPERFAMILY RING/U-box 259 291 - -
Sebi108g00008 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 214 IPR013083 -
Sebi108g00008 429 ProSiteProfiles TRIAD supradomain profile. 129 324 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi108g00008 Sebi-Chr108 567413 569092 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi108g00008 284 429 ARIADNE family AT1G65430 38.776 3.35e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi108g00008 K11968 - gmx:100801350 305.834