Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi108g00006 ATGGACTCTACATTGGACTTGAATCCTTTTAGTGACGACAAACATGAAATAATTGAAGATTTCCTTCCAAACATGGAGGAGGATGGCGATACGGCTGTGTATAATAGCTACATTGAGGCAGCTGAGAATTCTATTTCTACCAAGACCATATTTGGGGAGGCACACTTCACCATTTTGGGTGAATCTGACATCAAGCAGCTTCAAGAGGCTGATATCAATCAAGTTTCAACCGTTCTTTTGATATCAAAATTTGTTGCTTGCCTTTTGCTCCATCACTATGAGTGGAGTGTGAATAAAGTGATCGAAGCATGGATTGATAATGAAGAAAGAGTTCGCAACGCTGTAGGGTTGCTTAAACAACCCCAGGTTAATTTTTCTAGCTCAGAAATTTTCATGTGTGGGATCTGTTTCGAAACCCTTTGTGGTGATAAGATTAGGTCAGCAGAGTGTGGACATCCATTTTGCATGATTTGTTGGATGCGCTATGTGGATACGAAGATTGACGAGGGTCCTTATAAGTGCTTGACACTTAGATGCCCCGAACCCTTTTGTGGTGCAGCTGTGGATGGAGACATGGTTCACAAACTTGCAAGTGAATCAAGTATAAAAAGGCCTTCAACTGATTTTAATTTTATAATTGAGGCTTGGAAAGAAGTGATTGAATGTAGAGGGGTACTAAAATGGTGTTATACATATGGATATTATCTCCCTGATGATATAAAGGTCAAGAAGGACTTTTTTGAGTACATCCAACATAAGGCTGAGGTTACTTTCGAAAAGCTTGATCAATGTGTAGGAATGGAACTTGAAGGGCATCTAAATGTTAAGCGAAAAGATGACTTAAATGATTTTCGTTTGAAGGTAGTCCAATTGACTAATGTGACCAAGAATTATTTTGACAAGTTGGTGAAAGCGTTAGAGGATGGCCTAGCTGATGTGCACGTCAATAACAACATGAGGGTGAAAAGAAAATCAACTGAGATAGGTGAGACCTCTAATCAAAGGGGGACCAAGAGAATAATGACCATTGATGGACTGACCGATGATGATCTTTGGCAATGTGAGGCATGTGGTCATTACAATTCTGCCGCTTCTCCTGTATGTCAGGATACTAATTGCAGACAATACTCTGATTAG 1137 0.3984 MDSTLDLNPFSDDKHEIIEDFLPNMEEDGDTAVYNSYIEAAENSISTKTIFGEAHFTILGESDIKQLQEADINQVSTVLLISKFVACLLLHHYEWSVNKVIEAWIDNEERVRNAVGLLKQPQVNFSSSEIFMCGICFETLCGDKIRSAECGHPFCMICWMRYVDTKIDEGPYKCLTLRCPEPFCGAAVDGDMVHKLASESSIKRPSTDFNFIIEAWKEVIECRGVLKWCYTYGYYLPDDIKVKKDFFEYIQHKAEVTFEKLDQCVGMELEGHLNVKRKDDLNDFRLKVVQLTNVTKNYFDKLVKALEDGLADVHVNNNMRVKRKSTEIGETSNQRGTKRIMTIDGLTDDDLWQCEACGHYNSAASPVCQDTNCRQYSD 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi108g00006 378 Gene3D - 186 313 - -
Sebi108g00006 378 ProSiteProfiles Zinc finger RING-type profile. 133 180 IPR001841 -
Sebi108g00006 378 FunFam RBR-type E3 ubiquitin transferase 127 214 - -
Sebi108g00006 378 SUPERFAMILY RING/U-box 127 204 - -
Sebi108g00006 378 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 63 201 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi108g00006 Sebi-Chr108 460791 462500 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi108g00006 204 369 ARIADNE family AT1G65430 41.916 1.74e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi108g00006 K11968 - gmx:100801350 200.675