Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi108g00005 ATGGACTCCACAGTGGACTTGAATCTTTTCAGTGATGACAACCATGAAATAATTGAAGATTACCTTCCAAACATGGAGGAGAAGGGCGAAACGACCGTGTGTAGTAGCTACATTGAAACAACTAAGAATCTTATTTCTATCAAGACCATATCCATGGAGAAACACTTCACCGTTTTGGATGAATTTGACATCAAGCGTCTTCAAGAGGCAGATATCAATCAGGTTTCGAATGTTCTTGTGATATCAAGATTTGTTGCTTGCCTTTTGCTCCGTCACTGGTTGCTTAAACAACCCCAGGTAAATTTTTCCAGCTCAGAAATTTTCATGTGTGGGATCTGTTTCGAAACCCTTTATGGTGATAAGATTAGGTCAGTAGGGTGTGGCCATCCATTTTCCATGATTTGTTGGATGCGCTATGTGGATACAAAGATTGATGAGGGTCCTTATAAGTGCTTGACACTTAAATGCCCCAAACCCTCTTGTGGTGCAGCTGTGGATGGAGACATGGTTCACAAACTTGCAAGTGAATCAAGTAAGAAAAGGTACGATCAATTTTTGTTCCGCTCTTATGTGGAAAACAATAAGAAGATTAAGTGGTGTCCTTCTCCTACTTGTAGGTATGCTGTAAGTTTTGAAGCTGATGGTTATTGA 651 0.4025 MDSTVDLNLFSDDNHEIIEDYLPNMEEKGETTVCSSYIETTKNLISIKTISMEKHFTVLDEFDIKRLQEADINQVSNVLVISRFVACLLLRHWLLKQPQVNFSSSEIFMCGICFETLYGDKIRSVGCGHPFSMICWMRYVDTKIDEGPYKCLTLKCPKPSCGAAVDGDMVHKLASESSKKRYDQFLFRSYVENNKKIKWCPSPTCRYAVSFEADGY 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi108g00005 216 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 54 206 IPR031127 GO:0004842|GO:0016567
Sebi108g00005 216 ProSiteProfiles TRIAD supradomain profile. 106 216 IPR044066 -
Sebi108g00005 216 FunFam RBR-type E3 ubiquitin transferase 104 194 - -
Sebi108g00005 216 Pfam IBR domain, a half RING-finger domain 180 214 IPR002867 GO:0008270
Sebi108g00005 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 191 IPR013083 -
Sebi108g00005 216 SUPERFAMILY RING/U-box 104 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi108g00005 Sebi-Chr108 256901 257620 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi108g00005 53 211 ARIADNE family AT1G65430 44.505 2.26e-48 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi108g00005 K11968 - gmx:100801350 207.608