Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1086g00010 ATGGAAATGCCTCAGTTCGTTCAATACGACGCCGCTTCCTCCGCTACTTCCTCCCATCATTACTTCCTTGACAATTTGTACGCCAATGGGTGGGGAAACCCCAAGTCTCAGTTACTATACGGTGCGCAAGTGGAGCAAAATCTGAACCACAGTAACAGGGTAGAGCAACAACCACCGTCGCTTCTTTTCATGGACTCTTCGCACTCGCAGCACGTGAACCACGCGCCGCCACCGAAGCTTGAGGATTTTCTAGGCGATAGCCAGACGGAGACTCAGGATTCTTCCCTCACTCACATATATGACCATCACCATGGCTCTGCTTACTTCGGTGGTGACCACCAAGATCTCAAGGCTATTGCTGCCTTCCAAGCTTTCTCTACCAACTCTGGCTCAGAGGTTGATGACTCTGCTTCCATCGGAAAAACGCAACCAGGTTGCACCAACGAGTTCGGGACTCACTCTATTGAGTCTTCTGCCAACGAGTTAGCCTTCTCTGCAACCGCCGCCGCCGCGACCGGGACTTTGTCCCTTGCCGTCGCGCAGAGCTCCGAGGAGACTCTCGTTGCGGCTGATTCCGACAGCTCGAAGAAGATAGCCGATACCTTCGGCCAGAGAACTTCAATTTACAGAGGTTCTCTCTTTTTCCAAGCCAAAGGATCTTTTGGCACATTGGAAGTTGAAAAGAGAGTAGTGATTGACCATCCAAGCCATGGTGTTGACACCGATGGACGGGTAGATATGAAGCGCATCTATGGGATAACAGCTGTAGAAGGGAGGGTCAGGCTAGGAAAGGGCGTCAAGTGGCTTGCATGCATTGAAGGTGCATTAATGGTTGGAGTGTGCTCAGACATTTTAATCTCTTTCATTTCACTGTGCATCCCTTCCTTTCCTCTCCCTGGCCTTCTTCCGTACTCCTTTGGTGTTGACGCCACCATGTCTATTCTAATCCCCTCTTTGGTCATAAGTCATAACACTGGTGGATATGACAAGGAAGAAAAGGCCGCGAGGGCCTATGATTTGGCAGCTCTAAAGTACTGGGGTCCCACCGCTACCACCAACTTCCCTGTTTCCAACTATACAAAGGAATTGGAAGAGATGAAGCATGTAACAAAGCAAGAATTTATTGCATCACTGAGAAGGAAAAGTAGTGGTTTTTCCAGAGGAGCTTCCATCTATAGGGGTGTTACAAGGCATCACCAACAAGGTAGATGGCAAGCAAGAATTGGCCGTGTTGCTGGAAACAAAGATCTGTATTTGGGAACATTCGCAACTGAAGAGGAAGCAGCAGAGGCATACGATATTGCTGCCATAAAATTCAGAGGTGCAAACGCAGTAACCAATTTTGAGATGAATAGATATGATGTGGAAGCTATAATGAAGAGTTCTCTTCCAGTTGGTGGGGCAGCTAAACGCTTGAAGCGTTCCTTAGAATCAGAGCAGAAAGCTCCTCTGAGCAATAGTCAGCAGAACCCACAGTGTGGAACCGTGAGTAACAGCATCAATTTCTCGGCCATTCATCAGCCAGTTGCTTCTATCCCTTATGGAATTCCGTTTGATTCGACAACAGCATATTATCATCATAACCTTTTCCAACATTTTCATGGTACCAACGATGGCACTGCAGAGTCTGCTGTAACTTCCACCAATGCAACTGGACTGACTGCTCTGCCAACATCAGCAGCTGAGTTCTTCATATGGCCTCATCAGTCCTATTGA 1716 0.4808 MEMPQFVQYDAASSATSSHHYFLDNLYANGWGNPKSQLLYGAQVEQNLNHSNRVEQQPPSLLFMDSSHSQHVNHAPPPKLEDFLGDSQTETQDSSLTHIYDHHHGSAYFGGDHQDLKAIAAFQAFSTNSGSEVDDSASIGKTQPGCTNEFGTHSIESSANELAFSATAAAATGTLSLAVAQSSEETLVAADSDSSKKIADTFGQRTSIYRGSLFFQAKGSFGTLEVEKRVVIDHPSHGVDTDGRVDMKRIYGITAVEGRVRLGKGVKWLACIEGALMVGVCSDILISFISLCIPSFPLPGLLPYSFGVDATMSILIPSLVISHNTGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYTKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVEAIMKSSLPVGGAAKRLKRSLESEQKAPLSNSQQNPQCGTVSNSINFSAIHQPVASIPYGIPFDSTTAYYHHNLFQHFHGTNDGTAESAVTSTNATGLTALPTSAAEFFIWPHQSY 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1086g00010 571 ProSiteProfiles AP2/ERF domain profile. 249 355 IPR001471 GO:0003700|GO:0006355
Sebi1086g00010 571 Gene3D AP2/ERF domain 391 451 IPR036955 GO:0003700|GO:0006355
Sebi1086g00010 571 Gene3D AP2/ERF domain 319 357 IPR036955 GO:0003700|GO:0006355
Sebi1086g00010 571 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 70 492 - -
Sebi1086g00010 571 CDD AP2 390 449 IPR001471 GO:0003700|GO:0006355
Sebi1086g00010 571 MobiDBLite consensus disorder prediction 67 91 - -
Sebi1086g00010 571 SUPERFAMILY DNA-binding domain 325 357 IPR016177 GO:0003677
Sebi1086g00010 571 SUPERFAMILY DNA-binding domain 390 450 IPR016177 GO:0003677
Sebi1086g00010 571 ProSiteProfiles AP2/ERF domain profile. 391 449 IPR001471 GO:0003700|GO:0006355
Sebi1086g00010 571 SMART rav1_2 391 455 IPR001471 GO:0003700|GO:0006355
Sebi1086g00010 571 SMART rav1_2 323 361 IPR001471 GO:0003700|GO:0006355
Sebi1086g00010 571 FunFam AP2-like ethylene-responsive transcription factor 390 451 - -
Sebi1086g00010 571 CDD AP2 326 357 IPR001471 GO:0003700|GO:0006355
Sebi1086g00010 571 Pfam AP2 domain 391 441 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1086g00010 Sebi-Chr1086 116043 120395 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1086g00010 326 571 AP2-EREBP Transcription Factor Family AT5G65510 67.871 1.52e-96 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi1086g00010 AP2 2.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1086g00010 K09285 - gmx:100777168 443.351