Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1084g00005 ATGGAGTCTCATGATGAGACAGGATGCCAGGCTCCCGAACACCCCATTCTTTGCATTAATAATTGTGGTTTCTTTGGAAGGGCAGCTACCATGAACATGTGTTCCAAGTGCTACAAGGACATGCTCTTGAAGCAGGAACAGGACAAACTCGCTGCCTCATCGGTTGAAAACATTGTGAATGGCGGTTCCACTGGCAATGGAAAGCAGGTCGTGACTGCAGGTGTTGTTGATGTAAAAGTTGGAACTGTGGAGGTCAAGAAAGTCTCTGCTCAGATTTCTGGGGATTCCTCCTCTGGTGAGAGCTTGGAGAATAAAGCCAAGACTGGTCCCAGCAGATGTGCCACATGCAGGAAACGTGTTGGATTAACTGGTTTCAGCTGCAAATGTGGCAACCTCTTTTGTGCAATGCATCGATATTCTGATAAACATGATTGCCCTTTTGATTATAAGACTGTTGGTCAGGAGGCCATAGCTAAAGCCAATCCAGTAATTAAGGCAGATAAGCTTGATAAAATATAG 519 0.4528 MESHDETGCQAPEHPILCINNCGFFGRAATMNMCSKCYKDMLLKQEQDKLAASSVENIVNGGSTGNGKQVVTAGVVDVKVGTVEVKKVSAQISGDSSSGESLENKAKTGPSRCATCRKRVGLTGFSCKCGNLFCAMHRYSDKHDCPFDYKTVGQEAIAKANPVIKADKLDKI 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1084g00005 172 Pfam AN1-like Zinc finger 113 150 IPR000058 GO:0008270
Sebi1084g00005 172 SUPERFAMILY AN1-like Zinc finger 104 167 IPR035896 -
Sebi1084g00005 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 172 - -
Sebi1084g00005 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Sebi1084g00005 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 54 - -
Sebi1084g00005 172 Gene3D - 87 168 IPR035896 -
Sebi1084g00005 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
Sebi1084g00005 172 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Sebi1084g00005 172 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Sebi1084g00005 172 Gene3D - 1 60 - -
Sebi1084g00005 172 FunFam Zinc finger AN1-type containing 6 86 168 - -
Sebi1084g00005 172 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1084g00005 Sebi-Chr1084 140034 140552 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1084g00005 5 172 C2H2 Transcription Factor Family AT3G52800 42.775 1.20e-40 133