Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1084g00002 ATGGCAGGATTATCCTATCCGAGTGAAGAACAATCACAAATTGAATCAACCAATGCAATGGATTGGACTCAAAATTCAGTGACACCCCATGACCAAATGGGAACTTCTTCCCAATCTCAAGTCTCATTGAACAATTGGACCCAATGTCCAACCCAAGATGATGCTTTTTCTACACAACAAATTGTTCTAGAATCTTCATCCATGGTCCCCACAACTGTGTTGGAGGCAGTGATTGATGAGAGGCATATTGAAGAATGCCTAAATCGACCCTTGTCGTTGCCATACCAACTTCGACACCATGCCAGGAATGAGAAGCATCAGGGAGGGTCTAGCAAAATTAGTAGTAATTACACATCTGCATATCGGGGTGTAACAAAGTGCAATGAGCAACGTTATGAAGCCTTTGTAAGGGATAATACTATACAGGGTGAAAGTGGAAGAACAGCTGCCAGAGCTCATGATTTGATTTCAATTAAGATTGGGGGCACATCTGCACCAACAAATTTTCCTGTGAGCTGCTATTGGAAGGAAATCGGTGAAATGAAAACTATGAACCTAAGAGATTTTATCGATGCTGTTAGAAGGAAGGGCAAGGGATTTACTGATAAGGATTGCGCTTATCGTGGTGTCTACAAGAACCCGGGGAGTAGAACATGGCAAGCGAGGTTGGGTCAACATGATAGAGGGATGCTAAGCATATACTTGGGAACATACTATACTGCTGAGGATGCAGCTAGATCTTATGATATAGCATCAATAAAAATGAAGGGCAAGGCTGCCATTACCAACTTTGATTTGAATAGTTATGATGTGAAGGGCATTATGGATGGTGTAAATGCCTTTGCAATGTCATCATGGAAAATACAAACACATAATCATAATGGAGTTGTTTTCCAAAGTAGTACTGAAACACATGGCCATAAACCAAATCCTTGCAAGGGAAAGAAACCTAAAAACAACTCCTCCCAACGAGACCAACAAGAACACAACTTTCATGGCTTCCAACAACCTAATCCCATCCCAAATAACCCTTATATCCTTGATAATTCAAGTGGTAACTATGAAGGAACATTACAACAGTCATTATTGATAGGGACTGGCCAGGACTTTCAAGCATCACAACTACAGAACCTTGTGAATGTTAACAACAATGATCCCCAACCTCATAACCTTGTCAACAACCAAGTTTTGGAACAAAGCCCTAGCATTCCCATTCTTCAAGGTTCCTTGCAGACTTTTGAGATCCAAAATTATCTGAGTTTTCCAAATGGGCCATCTGGTTTTGGAACACAGACACTTGGGGAAACCATGGAGTATTTAAGCAATACACATTCTTCAAATCAAGTGGTGAATGGAAGTCTGGGAGCATCAAATGGTGGTGCTTGTTCATTTGGGTTACAATCCACAGTGATACATCCAATTGAGCCAAGTAATCAAGGATTTGAAACAACACAACTCCATCTACCTGCATTGGACCAAAGTTTTGAATGTTACAATAACTACCCTCCCAGAGATAATTTGAACCAAAACCCATCTCAGAACTTAAATGCAAGTTTGTCTTATGGTTTTCAGAATCCTTCTTCTGGAGAAAACGATGATTTTCAAAGTCACATGATTGGAGAGATTCAAGAAGATTTCGACATCAGTCAATATCTCAATAGCTCTTACATGGAACAAAATGATTGCACCAATATATGA 1698 0.4011 MAGLSYPSEEQSQIESTNAMDWTQNSVTPHDQMGTSSQSQVSLNNWTQCPTQDDAFSTQQIVLESSSMVPTTVLEAVIDERHIEECLNRPLSLPYQLRHHARNEKHQGGSSKISSNYTSAYRGVTKCNEQRYEAFVRDNTIQGESGRTAARAHDLISIKIGGTSAPTNFPVSCYWKEIGEMKTMNLRDFIDAVRRKGKGFTDKDCAYRGVYKNPGSRTWQARLGQHDRGMLSIYLGTYYTAEDAARSYDIASIKMKGKAAITNFDLNSYDVKGIMDGVNAFAMSSWKIQTHNHNGVVFQSSTETHGHKPNPCKGKKPKNNSSQRDQQEHNFHGFQQPNPIPNNPYILDNSSGNYEGTLQQSLLIGTGQDFQASQLQNLVNVNNNDPQPHNLVNNQVLEQSPSIPILQGSLQTFEIQNYLSFPNGPSGFGTQTLGETMEYLSNTHSSNQVVNGSLGASNGGACSFGLQSTVIHPIEPSNQGFETTQLHLPALDQSFECYNNYPPRDNLNQNPSQNLNASLSYGFQNPSSGENDDFQSHMIGEIQEDFDISQYLNSSYMEQNDCTNI 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1084g00002 565 CDD AP2 207 265 IPR001471 GO:0003700|GO:0006355
Sebi1084g00002 565 SUPERFAMILY DNA-binding domain 206 266 IPR016177 GO:0003677
Sebi1084g00002 565 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 52 366 - -
Sebi1084g00002 565 MobiDBLite consensus disorder prediction 300 340 - -
Sebi1084g00002 565 MobiDBLite consensus disorder prediction 503 533 - -
Sebi1084g00002 565 MobiDBLite consensus disorder prediction 326 340 - -
Sebi1084g00002 565 Gene3D AP2/ERF domain 120 172 IPR036955 GO:0003700|GO:0006355
Sebi1084g00002 565 Gene3D AP2/ERF domain 206 267 IPR036955 GO:0003700|GO:0006355
Sebi1084g00002 565 SMART rav1_2 206 271 IPR001471 GO:0003700|GO:0006355
Sebi1084g00002 565 SMART rav1_2 120 176 IPR001471 GO:0003700|GO:0006355
Sebi1084g00002 565 ProSiteProfiles AP2/ERF domain profile. 206 265 IPR001471 GO:0003700|GO:0006355
Sebi1084g00002 565 SUPERFAMILY DNA-binding domain 119 172 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1084g00002 Sebi-Chr1084 66243 70124 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1084g00002 118 276 AP2-EREBP Transcription Factor Family AT1G51190 44.000 1.02e-36 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi1084g00002 AP2 5.8e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1084g00002 K09285 - pvu:PHAVU_001G137500g 259.61