Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1080g00007 ATGGGTTCTCACCAACAAGAACCATGGATGTTGGAAAATGGCACCTTGAAGGGTTTGAGCAAGGAGATGAGGCATGGACGACGCACAGCACATAACATGTCCTCTTCTTCCTTGCGCAAGAAATCTGATATCACTCTTGTGTCAAAGGTTCGATGTGCTTTGCTTAGAAACTTTCTTGTTAACATCCAAGAGGTTATTCTTGGAACCAAGCTTTCCATTCTCTTCCCTGCTATCCCTGCTGCTATCATTGCTGAATGCTATGGTTTTGGAAGGTCCTGGGTTTTTGTATTGAGCTTACTTGGACTTACCCCACTTGCTGAACGTGTTAGCTTCCTCACAGAACAAGTTGCCTATTACACAGGTCCCACAGTTGGAGGACTTCTAAATGCCACATGTGGGAATGTTACTGAGCTCATAATAGCAATATTTGCTCTTAGCACAAACAAAATTGCTGTGGTCAAGTATTCTCTCTTGGGTTCCATCCTTTCAAACCTTCTTTTGGTTCTTGGAACCTCTCTATTCTGTGGTGGCATTGCAAACCTTAGACTGGAACAAAAATATGACAGAAGACAAGCAGATGTTAACTCACTCATGTTGCTGCTTGCATTGTTGTGCCACTTGCTTCCAATGCTGTTCAGATTTAGTGCTCCTTCTGCTGCTCTCACTGCAGAGTCATCACTCAACTTGTCTAGAGCTTCTAGCATTGTGATGATGCTTGCATATCTTGCTTACCTTGTCTTTCAACTGTGGACTCACCGGCAATTATTTGAAGCTGAAGATGAAGATGAAGATTGCAACAATGCTTCAGAAGAACAAGCTGTGATTGGATTCTGGAGTGGCTTTGCTTGGTTGGTTGGAATGACTGTGTTCATTGCTTTGTTATCTGAATATGTGGTGGATACAATTGAGGATGCATCTGATTCATGGGGTCTGTCTGTTAGCTTCCTCAGCATAATCTTGCTACCAATAGTTGGCAATGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGACATCTCATTAGGTGTTGCATTGGGTTCAGCAACACAAATTGGCATGTTTGTGGTTCCCCTATGTGTGATTGTGTCTTGGATAATGGGTGTCAAAATGGACCTGAACTTCAACCTCTTAGAGACAGGTTCTCTTGCTTTGGCAATAATAGCCACAAGCTTTACTTTACAGGATGGCACTTCTCACTACATGAAAGGCCTTATTCTCCTGCTTTGCTACATTGTTATTGGGGCTTGCTTCTTCGTACAAAGAACACCCTTTAATCAAGCTGATGTTACTAACATGACCCTCAAATCAGCAACTGCTGCAGTTTCAAGTGCCTAG 1350 0.4281 MGSHQQEPWMLENGTLKGLSKEMRHGRRTAHNMSSSSLRKKSDITLVSKVRCALLRNFLVNIQEVILGTKLSILFPAIPAAIIAECYGFGRSWVFVLSLLGLTPLAERVSFLTEQVAYYTGPTVGGLLNATCGNVTELIIAIFALSTNKIAVVKYSLLGSILSNLLLVLGTSLFCGGIANLRLEQKYDRRQADVNSLMLLLALLCHLLPMLFRFSAPSAALTAESSLNLSRASSIVMMLAYLAYLVFQLWTHRQLFEAEDEDEDCNNASEEQAVIGFWSGFAWLVGMTVFIALLSEYVVDTIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIGMFVVPLCVIVSWIMGVKMDLNFNLLETGSLALAIIATSFTLQDGTSHYMKGLILLLCYIVIGACFFVQRTPFNQADVTNMTLKSATAAVSSA 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1080g00007 449 Gene3D - 266 424 IPR044880 -
Sebi1080g00007 449 Gene3D - 122 261 IPR044880 -
Sebi1080g00007 449 FunFam Vacuolar cation/proton exchanger 268 424 - -
Sebi1080g00007 449 NCBIfam calcium/proton exchanger 77 423 IPR004798 GO:0006816|GO:0015369
Sebi1080g00007 449 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 26 428 IPR004713 GO:0006812|GO:0008324|GO:0016020
Sebi1080g00007 449 FunFam Vacuolar cation/proton exchanger 122 266 - -
Sebi1080g00007 449 Pfam Sodium/calcium exchanger protein 280 418 IPR004837 GO:0016020|GO:0055085
Sebi1080g00007 449 Pfam Sodium/calcium exchanger protein 93 250 IPR004837 GO:0016020|GO:0055085
Sebi1080g00007 449 NCBIfam calcium/proton exchanger 57 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1080g00007 Sebi-Chr1080 128493 131654 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1080g00007 7 428 Antiporters AT2G38170 71.694 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1080g00007 K07300 - gmx:100816231 709.138