Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi107g00020 ATGAGAAAACCTGATCTGATGGGAAAAGACAGCAACAACATTAAGAGCAAGTTAAGGAAAGGGTTGTGGTCACCTGAGGAAGATGAGAAGCTGATTAGGTACATGATAACTAAAGGGCAAGGCTGCTGGAGTGACATTGCTAAGAATGCTGGTCTCCAAAGGTGTGGTAAAAGCTGCCGTCTTCGTTGGATTAATTACTTGAGACCTGATCTCAAACGCGGTGCATTCTCACCCCAAGAGGAAGACCTCATCATTCATTTGCACTCCATTCTTGGCAACAGATGGTCTCAGATAGCGGCACGTCTCCCTGGTCGCACAGACAATGAGATAAAGAATTTCTGGAACTCCACATTGAAGAAAAGATTGAAAACAAACAACAGCGACTCATCAGAAGCTAGAGATGTGTTGAGTGGGAATATGATGGCCATTAATGAACATGATCAACTCATGACAATGTGCATGGATTCCTCTTCAAATTCATCAACCTCATCATCATCCATGGTTTTAGCTGAACCCTTTAGCTTCTTGTCCAACAATCGCTTTGACATGACCGGTTTTCCTGACATGCCTGCATGCTTAACCCATAGTGATTATGGAAATGGGATAATATTGGAGCCTAATAAAATTGGGTTAGAACTAGAAACTAGAACCATCGAAGATAATAGTAACCCAATTCATGATGTGAAGAGCCATAACAACCACTTCAATAATAGTTGCTTCTATAACACTCATCAGATTCAGGGCTCCAACTTAGACGACTTGTTTGGCTTTGGAAATCATGCCCAAGGGGAAAACTTAAGAATGGGAGAATGGGACTTGGAAGGTTTGATGCAAGACATATCCTTTTTTCCTTCCCTTGATTTCCAAGTTTGA 873 0.417 MRKPDLMGKDSNNIKSKLRKGLWSPEEDEKLIRYMITKGQGCWSDIAKNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKTNNSDSSEARDVLSGNMMAINEHDQLMTMCMDSSSNSSTSSSSMVLAEPFSFLSNNRFDMTGFPDMPACLTHSDYGNGIILEPNKIGLELETRTIEDNSNPIHDVKSHNNHFNNSCFYNTHQIQGSNLDDLFGFGNHAQGENLRMGEWDLEGLMQDISFFPSLDFQV 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi107g00020 290 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Sebi107g00020 290 SMART sant 19 69 IPR001005 -
Sebi107g00020 290 SMART sant 72 120 IPR001005 -
Sebi107g00020 290 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Sebi107g00020 290 Pfam Myb-like DNA-binding domain 73 117 IPR001005 -
Sebi107g00020 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Sebi107g00020 290 Gene3D - 74 137 - -
Sebi107g00020 290 CDD SANT 75 118 IPR001005 -
Sebi107g00020 290 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Sebi107g00020 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Sebi107g00020 290 PANTHER MYB DOMAIN PROTEIN 55 7 240 - -
Sebi107g00020 290 FunFam Myb transcription factor 75 122 - -
Sebi107g00020 290 FunFam MYB transcription factor 17 73 - -
Sebi107g00020 290 Gene3D - 17 73 - -
Sebi107g00020 290 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Sebi107g00020 290 CDD SANT 23 67 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi107g00020 Sebi-Chr107 1627449 1628869 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi107g00020 1 290 MYB Transcription Factor Family AT3G08500 48.094 1.19e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi107g00020 Myb_DNA-binding 1.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi107g00020 K09422 - gmx:100796379 420.239