Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi107g00010 ATGTGCGGTGGTCCTGAGAAATCAAAATCTCCTTCAACTTCATCTTCATCTTCATCTGCAGTCGAAGGTTCAGCTAACGTCAAAGACATGAATATCAAAATCTCCTTCAACTTCATCTTCATCTTCATCTGCAGTCGAAGTATACTTGAACTTGCTTCTAACAATGATTTTGAAGATTTTAAGCTAACTATAGACAGGGATGCTTCTCTAATAAATGAAGTTGGCCTCTGGTATGTCCGCCAAAATGGATCCAAACAAATTGTTCTGGAGCATAGAACTCCTCTAATGGTTGCTGCTACCTATGGGAGTGTTGATGTTTTAAAGCTTATACTCTCATGTCCGGAGGCTGATGTAAATTTCTCCTGTGGGACTGATAAAAGCACTGCCCTTCATTGTGCTGCTTCAGGTGGTGCTGTTAATGCAGTTGATGTTGTGAAGCTGCTTTTATCAGCTGGCGCTGATATCAGTGTTGTCGATGCTAATGGAAATCGTCCTGTTGATGTTATTGTTGTTCCTCCTAAGCTCCAAGGTATGAAAACAATGCTTGAAGAATTTCTCTCAGATTGTGCTTCTGATGGGTCTGTTGATGACTGCTCCCTTCCAGTTTCGGCTAATTCATCAAGTCTTGGTTTAGCTGCTCATTTATCATCACTTGATAATGGGTTGCCATCCTCTCCTTTGGTCTCAAAGTGTACTGAGACAGCTGTCAATCCTGCATCAGACAAGAAAGAATATCCAATTGATCCGTCACTTCCTGATATAAAAAACAGCATATATTCAACAGATGAGTTTCGGATGTTTTCATTCAAGGTCCGTCCTTGTTCCCGTGCATACTCTCATGATTGGACTGAGTGTCCTTTTGTTCATCCTGGGGAGAATGCTCGTAGGAGAGATCCCAGAAAATTCCATTACAGCTGTGTGCCATGCCCTGATTTTAGAAAAGGGGCTTGTAGACGTGGGGATATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGCTACACCCAGCTCAGTATCGGACAAGGCTCTGCAAAGATGGTACTAGTTGCAATAGAAGGGTATGTTTTTTTGCTCACACAGCCGAAGAGCTCCGTCCGTTGTATGTATCCACTGGATCTGCTGTTCCTTCACCTCGATCATCTGCTGCTGCTCCCAATGTCATGGACATGGCTGCTGCAATGAGTCTTTTTCCTGGTTCGCCTTCATCAATCTCTTCCATGTCTCCATCTCCTTTTGCACAGCCAACATCTCCATCTGCAAATAGCATATCTCACTCATCTACTGCATGGCCACAGCCAAATGTGCCAGCTCTTCATTTACCTGGAAGCAATGCTCAAACAAGTCGTTTGAGATCTTCTCTTAGTGCTCGAGACATGCCACCTGAAGACTTGAATGTTTTACAAGACTTTGATGGCCAGCAACACCTTTTGAATGAATATGGCTGTTTCTCACAGCCCCATCCTGGTGCCATTTCAATGAGTAGATCTGGTCGGTCTAAGACACTAACTCCATCAAATCTTGATGATCTATTTTCTGCTGAAATTTCTTCATCCCCAAGGTATTCTGACCCGGCAGCAGCTTCTGTATTTTCTCCCACACACAAATCAGCTGTTCTCAATCAGTTTCAACAACTTCAAAGTTCGTTATCACCCATAAATACAAATGTCTTGTCTCCTAAGAATTTTGATCATCCTCTGTTACAGGCTTCATTTGGTGTCACTTCTCCTGGAAGGATGTCACCAAGAAGTTTGGAATCCCTTTCTCCCATGAGCTCTCGGTTATCAGCATTTGCTCAGCATGAGAAACAGCAGCAACAGCTGCGGAGCTTTAGCTCAAGGGATCTTGGTGCTAACAGTCTTGTGTCTGTTGTTGGGTCCCCTATTAACTCCTGGTCTAAGTGGGGATCTCCTAATGGAAAAGTTGATTGGTCAGTAAATGGAAATGAGCTAGGTCGATTGCAAAGATCATCCTCATTTGAGCTTGGAAACAATGGGCAAGAGCCTGATCTATCCTGGGTCCAGTCTCTTGTCAAGGAGTCCCCACCTGAAATAAAAGAGAAATTGGCAGGTTCTGGCCCTATTGCATCTGCTGATGGACTGAATTCCAATCCTCAAGTAGAGTCTATTGATCATTCTGTTTTAGGAGCCTGGCTTGAGCAAATGCAGTTGGATCAGCTTGTAGTCTAG 2187 0.4358 MCGGPEKSKSPSTSSSSSSAVEGSANVKDMNIKISFNFIFIFICSRSILELASNNDFEDFKLTIDRDASLINEVGLWYVRQNGSKQIVLEHRTPLMVAATYGSVDVLKLILSCPEADVNFSCGTDKSTALHCAASGGAVNAVDVVKLLLSAGADISVVDANGNRPVDVIVVPPKLQGMKTMLEEFLSDCASDGSVDDCSLPVSANSSSLGLAAHLSSLDNGLPSSPLVSKCTETAVNPASDKKEYPIDPSLPDIKNSIYSTDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSAAAPNVMDMAAAMSLFPGSPSSISSMSPSPFAQPTSPSANSISHSSTAWPQPNVPALHLPGSNAQTSRLRSSLSARDMPPEDLNVLQDFDGQQHLLNEYGCFSQPHPGAISMSRSGRSKTLTPSNLDDLFSAEISSSPRYSDPAAASVFSPTHKSAVLNQFQQLQSSLSPINTNVLSPKNFDHPLLQASFGVTSPGRMSPRSLESLSPMSSRLSAFAQHEKQQQQLRSFSSRDLGANSLVSVVGSPINSWSKWGSPNGKVDWSVNGNELGRLQRSSSFELGNNGQEPDLSWVQSLVKESPPEIKEKLAGSGPIASADGLNSNPQVESIDHSVLGAWLEQMQLDQLVV 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi107g00010 728 SMART c3hfinal6 303 329 IPR000571 GO:0046872
Sebi107g00010 728 SMART c3hfinal6 338 361 IPR000571 GO:0046872
Sebi107g00010 728 Gene3D - 44 190 IPR036770 -
Sebi107g00010 728 PANTHER UNKEMPT FAMILY MEMBER 50 680 IPR045234 -
Sebi107g00010 728 PRINTS Ankyrin repeat signature 144 158 IPR002110 GO:0005515
Sebi107g00010 728 PRINTS Ankyrin repeat signature 91 106 IPR002110 GO:0005515
Sebi107g00010 728 ProSiteProfiles Ankyrin repeat region circular profile. 125 159 - -
Sebi107g00010 728 Gene3D - 303 366 - -
Sebi107g00010 728 SMART ANK_2a 125 157 IPR002110 GO:0005515
Sebi107g00010 728 SMART ANK_2a 90 120 IPR002110 GO:0005515
Sebi107g00010 728 SUPERFAMILY Ankyrin repeat 50 170 IPR036770 -
Sebi107g00010 728 MobiDBLite consensus disorder prediction 1 21 - -
Sebi107g00010 728 ProSiteProfiles Zinc finger C3H1-type profile. 308 330 IPR000571 GO:0046872
Sebi107g00010 728 MobiDBLite consensus disorder prediction 404 454 - -
Sebi107g00010 728 ProSiteProfiles Ankyrin repeat profile. 125 160 IPR002110 GO:0005515
Sebi107g00010 728 MobiDBLite consensus disorder prediction 7 21 - -
Sebi107g00010 728 Pfam Ankyrin repeats (3 copies) 82 158 IPR002110 GO:0005515
Sebi107g00010 728 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 308 328 IPR000571 GO:0046872
Sebi107g00010 728 FunFam Zinc finger CCCH domain-containing protein 66 261 329 - -
Sebi107g00010 728 MobiDBLite consensus disorder prediction 404 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi107g00010 Sebi-Chr107 1195823 1198070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi107g00010 1 725 C2H2 Transcription Factor Family AT5G12850 53.548 0.0 690
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi107g00010 Ank_2 1.5e-09 CL0465