Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1079g00011 GATGTAGGGAAAGCTTACAATGAATGGAGGCAGGGAGAACCAGCTGTTGAACGCTTGTTTGCTATGACCAAGTTCAAAAATAAGGTGGTTGAGAAGCCAGATGCTGTTGATTTGGACCATGTTACAGGGGACCTGAAATTCTGTGATGTCTCCTTTAAGTATAATGATGGCATGCCACTTGTTTTAAATGAATTGAATCTTCACATTAGGAATGGAGAGATAGTTGCTATTGTGGGTCCTTCTGGTGGAGGGAAAACAACACTTGCAAAACTGCTGCTTCGGCTTTATGATCCTATATCTGGTTCTATACTGATTGATAACCATAACATCCAAAACATTCGGTTGCAAAGTTTGAGAAGACATGTTGGTGTTGTTTCTCAAGATATAACACTTTTTTCAGGTACAGTTGCTGAAAACATTGGTTATAGGGATCTGACAACTAAAATTGACATGGAGAGGGTGAAGCATGTAGCTCGAACTGCCCATGCAGATGAGTTTATTAAAAAACTTCCAGAAGGATACAAAACCAAGATTGGACCAAGGGGCTCTACTTTAAGCGGAGGCCAGAGGCAAAGGCTGGCTATTGCAAGGGCTTTCTACCAAAATCCTTCAATATTAATTCTGGATGAGGCAACTTCTGCCTTGGATAGTAAATCTGAGTTATTAGTGAGACAAGCTGTAGAGCTTTTGATGGAAAATCGCACAGTAAGGCAACTAGCTATTTCTGCCCTTGACTTGTGA 741 0.4089 DVGKAYNEWRQGEPAVERLFAMTKFKNKVVEKPDAVDLDHVTGDLKFCDVSFKYNDGMPLVLNELNLHIRNGEIVAIVGPSGGGKTTLAKLLLRLYDPISGSILIDNHNIQNIRLQSLRRHVGVVSQDITLFSGTVAENIGYRDLTTKIDMERVKHVARTAHADEFIKKLPEGYKTKIGPRGSTLSGGQRQRLAIARAFYQNPSILILDEATSALDSKSELLVRQAVELLMENRTVRQLAISALDL 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1079g00011 246 SMART AAA_5 71 245 IPR003593 GO:0016887
Sebi1079g00011 246 Gene3D - 43 236 IPR027417 -
Sebi1079g00011 246 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 45 246 IPR003439 GO:0005524
Sebi1079g00011 246 FunFam ABC transporter ATP-binding protein/permease 38 242 - -
Sebi1079g00011 246 Pfam ABC transporter 62 213 IPR003439 GO:0005524
Sebi1079g00011 246 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 2 236 IPR039421 -
Sebi1079g00011 246 Gene3D ABC transporter type 1, transmembrane domain 12 42 IPR036640 GO:0005524|GO:0016020
Sebi1079g00011 246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 237 IPR027417 -
Sebi1079g00011 246 ProSitePatterns ABC transporters family signature. 185 199 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1079g00011 Sebi-Chr1079 139976 141729 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1079g00011 36 240 Calmodulin-binding Proteins AT2G36910 45.192 7.89e-51 176