Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1074g00003 ATGGCAGACCTCGAACATATTAAGAAGGAGGCAGTTGATCTCGAGCGTATACCTGTTGATGAAGTGTTCCGAGAATTAAATTGTTCCAGAGAAGGTCTCACTAATGACGAAGGAAAGCAAGTTCCTCAAATTCTTGGGCTTTATGTGGAACCCTCTTTCATGGGTCATGGAAGCTGCTGCTATCATGGCCATTGCATTGGCAAATGGAGGGAGGAAAACAATGCAGGCAATGCTGCTGCAGCACTTATGGCAGGTCTTGCTCCCAAAACCAAGGTTCTGAGAGATGGAAGGTGGAGTGAGCAGGATGCTTGTATATTGGTACCAGGAGACATAATCAGCATCAAATTAGGAGATATCATCCCAGCTGATGCCCGTCTCTTGGAAGGAGATGCTCTCAAGATTGATCAGTCTTCACTCACTGGTGAGTCCTTGCCTGTTACTAGGAACCCTGGTGATGAAGTCTTCTCTGGGTCCACAGTAAAGCAAGGAGAGATTGAGGCTGTTGTGATTGCCACTGGGATCAACACCTTCTTTGGTAAGGCTGCTCACTTGGTGGACAGCACTAACCAAGTTTTGACAGCTATTGGTAACTTCTGTATCTGCTCAATTGCTATTGGCATGATAGTGGAGATTGTTGTCATGTACCCCATTCAGCACCGCAAGTATAGGAAGGGAATTGACAATCTCTTGGTGCTTCTCATTGGAGGGATTCCCATTGCCATGCCAACAGTTTTTGACAAGACTGGCACTCTAACACTCAACAAGCTTACTGTTTTCTCAAGAGATGCTGACAAGGACACAGTGATTTTACTTGGAGCTAGGGCCTCAAGGGTAGAGAACCAGGATGCTATTGATGCTTGCATTGTTGGAATGTTGGGAGATCCAAAGGAGGCTAGAGAAGGCATTACAGAGGTGCATTTCCTACCCTTCAATCCAGTAGACAAGCGTACAGCCATAACATACTATGATTCTGAGGGTAATTGGTACCGAGTAAGCAAAGGAGCACCAGAGCAGATTATTGAACTCTGCAATCTTAGAGAAGATGTGAAGAAGAAAGCTCTTTCCATCATTGATAAATTTGCTGATCGTGGTCTTCGTTCCCTTGCTATTTCCAAACAAGAAATTCCAGAGAAGAACAAGGATGGTGCAGGAGGACCATGGCAATTTGTGGGTTTGTTACCTCTCTTTGACCCACCAAGGCATGATAGTGCAGAGACTATCAAGCGTGCCCTTGTTCTTGGAGTGAATGTTAAGATGATCACTGGTGATCAGTTAGCTATTGGCAAAGAAACTGGTCGTAGGCTTGGTATGGGATGTAACATGTACCCTTCATCTTCCCTCCTTGGTGATCACAAAGATGAGTCTATTGCTGCTCTTCCAGTTGATGAACTCATTGAGAAAGCTGATGGCTTTGCTGGTGTCTTCCCTGAACATAAATATGAGATTGTGAAGAGACTTCAAGAGAGGAAACACATATGTGGAATGACTGGAGATGGTGTGAATGATGCTCCTGCTTTGAAAAGAGCAGATATTGGAATTGCAGTGGCTGATGCAACAGATGCAGCTAGAGGTGCATCTGACATAGTCCTCACTGAGCCTGGTTTGAGTGTCATAGTGCATGCAGTGTTGACAAGCAGAGCAATTTTCCAGAGAATGAAGAACTACACTATTTATGCTGTTTCTATTACAATCCGAATAGTACTTGGCTTTATGCTCCTTGCTCTCATTTGGAAATTTGATTTCTCACCTTTTATGGTTTTGATCATTGCCATACTAAATGATGGGACAATCATGACCATTTCCAAGGATAGGGTGAAGCCATCTCCTATGCCAGATTCATGGAAGTTGAGAGAGATTTTTGCCACAGGTGTTGTGCTTGGTGCCTACCTTGCTGTTATGACTGTTGTCTTCTTCTGGGCTGCTCATTCCTCTAATTTCTTCTCGGACAAATTTGGAGTGAGATCTATTAGGAATAACCACAATGAGCTCACAGCAGCTGTTTACCTTCAAGTGAGTATTGTAAGTCAAGCTCTCATCTTTGTTACAAGGTCAAGGAGCTGGTCTTACATTGAACGTCCTGGCATTCTTCTTATTGTTGCCTTTTTGATAGCACAATTGATTGCCACAATCATAGCTGTGTATGCAAACTGGGGATTTGCAAAAATCAAAGGAATTGGATGGGGTTGGGCTGGTGTCATTTGGCTCTACAGCCTTGTTTTTTATGTCCCCATGGATATCCTTAAGTTCATCATAAGATATGCATTGAGTGGCAAGGCATGGAATACTGTTACTGAAAGCAGGATTGCTTTCACCTCTAAGAAGGACTATGGAAGGGGAGAGAGAGAAGCACAATGGGCTGCAGCTCAACGCACACTTCATGGTTTGAATCCTCCTGAAACAGAAGAAATGTTAAATGAAAAGAACAACTATAGGGAGTTGTCTGAACTTGCAGAACAAGCTAGGAAACGTGCTGAAGTTGCAAGGTTAAGGGAGCTTCACACACTAAAGGGGCATGTTGAGTCTGTTGTGAAACTGAAGGGACTTGACATTGAGACAATTCAGCAGCACTACACTGTTTGA 2580 0.4376 MADLEHIKKEAVDLERIPVDEVFRELNCSREGLTNDEGKQVPQILGLYVEPSFMGHGSCCYHGHCIGKWREENNAGNAAAALMAGLAPKTKVLRDGRWSEQDACILVPGDIISIKLGDIIPADARLLEGDALKIDQSSLTGESLPVTRNPGDEVFSGSTVKQGEIEAVVIATGINTFFGKAAHLVDSTNQVLTAIGNFCICSIAIGMIVEIVVMYPIQHRKYRKGIDNLLVLLIGGIPIAMPTVFDKTGTLTLNKLTVFSRDADKDTVILLGARASRVENQDAIDACIVGMLGDPKEAREGITEVHFLPFNPVDKRTAITYYDSEGNWYRVSKGAPEQIIELCNLREDVKKKALSIIDKFADRGLRSLAISKQEIPEKNKDGAGGPWQFVGLLPLFDPPRHDSAETIKRALVLGVNVKMITGDQLAIGKETGRRLGMGCNMYPSSSLLGDHKDESIAALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKRADIGIAVADATDAARGASDIVLTEPGLSVIVHAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLREIFATGVVLGAYLAVMTVVFFWAAHSSNFFSDKFGVRSIRNNHNELTAAVYLQVSIVSQALIFVTRSRSWSYIERPGILLIVAFLIAQLIATIIAVYANWGFAKIKGIGWGWAGVIWLYSLVFYVPMDILKFIIRYALSGKAWNTVTESRIAFTSKKDYGRGEREAQWAAAQRTLHGLNPPETEEMLNEKNNYRELSELAEQARKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1074g00003 859 PRINTS H+-transporting ATPase (proton pump) signature 468 484 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi1074g00003 859 PRINTS H+-transporting ATPase (proton pump) signature 496 512 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi1074g00003 859 PRINTS H+-transporting ATPase (proton pump) signature 527 552 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi1074g00003 859 PRINTS H+-transporting ATPase (proton pump) signature 668 689 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi1074g00003 859 PRINTS H+-transporting ATPase (proton pump) signature 353 371 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi1074g00003 859 SUPERFAMILY HAD-like 244 544 IPR036412 -
Sebi1074g00003 859 Pfam haloacid dehalogenase-like hydrolase 244 510 - -
Sebi1074g00003 859 Gene3D - 496 754 - -
Sebi1074g00003 859 SFLD p-type atpase 244 548 IPR044492 -
Sebi1074g00003 859 FunFam Plasma membrane ATPase 389 544 - -
Sebi1074g00003 859 Gene3D - 808 859 - -
Sebi1074g00003 859 Gene3D - 6 187 - -
Sebi1074g00003 859 SUPERFAMILY Calcium ATPase, transmembrane domain M 13 755 IPR023298 -
Sebi1074g00003 859 Coils Coil 803 830 - -
Sebi1074g00003 859 NCBIfam HAD-IC family P-type ATPase 471 581 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi1074g00003 859 NCBIfam HAD-IC family P-type ATPase 72 244 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi1074g00003 859 SUPERFAMILY Calcium ATPase, transduction domain A 88 185 IPR008250 -
Sebi1074g00003 859 PANTHER CALCIUM-TRANSPORTING ATPASE 245 791 - -
Sebi1074g00003 859 Pfam E1-E2 ATPase 87 253 - -
Sebi1074g00003 859 FunFam Plasma membrane ATPase 250 396 - -
Sebi1074g00003 859 SFLD Haloacid Dehalogenase 244 548 - -
Sebi1074g00003 859 FunFam Plasma membrane ATPase 88 172 - -
Sebi1074g00003 859 CDD P-type_ATPase_H 88 749 IPR006534 GO:0008553|GO:0016020|GO:0120029
Sebi1074g00003 859 NCBIfam plasma-membrane proton-efflux P-type ATPase 246 714 IPR006534 GO:0008553|GO:0016020|GO:0120029
Sebi1074g00003 859 PRINTS P-type cation-transporting ATPase superfamily signature 391 402 - -
Sebi1074g00003 859 PRINTS P-type cation-transporting ATPase superfamily signature 413 423 - -
Sebi1074g00003 859 PRINTS P-type cation-transporting ATPase superfamily signature 135 149 - -
Sebi1074g00003 859 PRINTS P-type cation-transporting ATPase superfamily signature 519 531 - -
Sebi1074g00003 859 PRINTS P-type cation-transporting ATPase superfamily signature 496 515 - -
Sebi1074g00003 859 Gene3D - 250 396 IPR023299 GO:0000166
Sebi1074g00003 859 FunFam ATPase 4 plasma membrane-type 481 723 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1074g00003 Sebi-Chr1074 91009 96143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1074g00003 5 859 Primary Pumps ATPases AT2G07560 71.534 0.0 1318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1074g00003 K01535 - gmx:100796240 1407.51