Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi106g00031 ATGAAATGGTTTGGCAAGATTTTCAAAATTGGGTCCAGTAGAGGAAGAAGTGGTGGTCGTAATCTACAGCAACCTGCGGAGGAAAACATGGTTTGGCGAGCTCCAGCTAAATCATTGGGTGACCGTGCTAGATTTCAGAAGGAGGAAGATGATCTGAACCATGCAATGACACTTCCATTAGGCGAAGGTATAAAGAGACCAACTGGATACAGATGGCGGACAGGAACTGAAGAAGACTATGATAAGGCCCTTCAGGATCGCATGCACTCATCTGCATACCCTCCATATGCCCCTTTACCTTTTTATCCCCGGGGATATGGTATACCATCACATATCAGAATATGTGGAGGATGCAACCAGGAGATAGTGTACGGCAATTGTTTGGGAGTTGAGAATAGCTATTTTCATCCAGACTGTTTTCGGTGTCACTCTTGTCATTACCCCATTACTGAGCGTGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAGTCCTGTTTTAAAGAATTAACCCACCCTAAATGTGAAGTTTGCCATCAATATATACCAATAAATTCTGCTGGTTTAATTGAGTATAGGTGTCACCCCTATTGGAACCAAAAGTATTGTCCATCTCATGAGTATGATAATACAGCTCGCTGCTGTAGTTGTGAAAGATTAGAGTCTCGGGGTGAAAGATACTATAGATTGGATGATGGAAGGATTTTGTGCTTTGAATGTATGGAATCTGCTATAACGGATACTGGTGAATGTCAGCCTCTTTATCATGCCATCAGAGACTATTATGAAGGAATGAATATGAGAATAGATCAACAAGTCCCCATGCTTCTTGTTGGGAGAGAAGCACTTAATGAAGCTATTGTTGGGGAGAAGAATGGCTTCCATCACTTGCCAGAAACAAGGGGCTTATGCCTTTCAGAAGAGCAGACTGTCACCAGTGTACATAGATGGCCAATAATTGGAGGCCATCGATTAATAGGGATGAGAACTCAACCTCATAGGCTGACTAGAAAATGTGAAGTTACAGCTATTCTTGTTCTCTATGGTCTTCCAAGGTTACTCACAGGTGCTATCCTTGCCCATGAGTTGATGCATGCTTGGTTACGCCTTAAAGGTTACCGCAACCTTGACCCTGAAGTAGAGGAAGGTATTTGTCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGAGGGTTTAGAGCAGCTAATGCAGCTGTGAATAAATATGGTTTACGTTGTACTCTGGAGCATATTCGTTTGACTGGTCAGTTCCCACTGTAA 1281 0.4278 MKWFGKIFKIGSSRGRSGGRNLQQPAEENMVWRAPAKSLGDRARFQKEEDDLNHAMTLPLGEGIKRPTGYRWRTGTEEDYDKALQDRMHSSAYPPYAPLPFYPRGYGIPSHIRICGGCNQEIVYGNCLGVENSYFHPDCFRCHSCHYPITEREFSLSGKHPYHKSCFKELTHPKCEVCHQYIPINSAGLIEYRCHPYWNQKYCPSHEYDNTARCCSCERLESRGERYYRLDDGRILCFECMESAITDTGECQPLYHAIRDYYEGMNMRIDQQVPMLLVGREALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSVHRWPIIGGHRLIGMRTQPHRLTRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLDPEVEEGICQIANDSSPAYGGGFRAANAAVNKYGLRCTLEHIRLTGQFPL 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi106g00031 426 Pfam Protein DA1 264 387 IPR022087 -
Sebi106g00031 426 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 110 140 - -
Sebi106g00031 426 PANTHER PROTEIN DA1-RELATED 2 3 387 IPR045218 -
Sebi106g00031 426 CDD LIM_DA1 115 167 - -
Sebi106g00031 426 ProSitePatterns LIM zinc-binding domain signature. 115 149 IPR001781 -
Sebi106g00031 426 SMART lim_4 114 166 IPR001781 -
Sebi106g00031 426 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 141 206 - -
Sebi106g00031 426 FunFam Protein DA1-related 2 103 168 - -
Sebi106g00031 426 ProSiteProfiles LIM domain profile. 113 173 IPR001781 -
Sebi106g00031 426 Pfam LIM domain 115 168 IPR001781 -
Sebi106g00031 426 Gene3D Cysteine Rich Protein 110 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi106g00031 Sebi-Chr106 600746 605458 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi106g00031 DA1-like 1.4e-62 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi106g00031 - - gmx:100793901 786.949