Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi106g00009 ATGGAGGAATCTCAGTACTTGATGTGGATGAAGAGGAAACAAATCTTGAAGTCACATATTCAAGCACCATTTGACAACAACTCTAATTGGGAGGAAAGGGCTTTTGCAGAAGATGCAGCTAGGATACTTGGTGGATGCATATGGCCTCCAAGATCTTACTCATGTCACTTCTGTAAAAGAGAGTTCAGGTCTGCTCAAGCTCTAGGGGGTCACATGAATGTTCACAGAAGGGACAGAGCTAGGCTCAAACAAAGTCATAGCCACCATAATGAAGCCCTTCATTATCATCACAAAAATGATTTTATTGCAACAAGCAGCCTCTCACCTTCTAGGCCCTCAACACAAGAAAATTGTTGTCAACCTGCCATGTTGTCTCCTTATTCTGCTTCAATTAGCTGGGGGCACCATATGGGGTGTCCTGATTCAGAACCAAAAGGGCTAGTCAATGCAAAGGAAGATTTTTTAAAAGGTTTGGATTGTAATGATTATGTTGAGACAAGTTTGTCTGTGGGACAAAATTTGGTGTTTGGCCAAAAATTGCCAACTGATTCATGTGGGGATGAAAGCATCAGTTATAAAAGACCAAAGACTTCTATTTCTTCCCTTCCTGTCTTCCTCAAACCATGTTCAACAAATGATAGATGCCTCACTTTCCAGTCTGCAGAATTTGTACTTGGACTTAAGCCTGGAATGGAAGACTTAGATCTTGAACTCAGGCTGGGGAAACCACAGAAAGTTTAG 741 0.4157 MEESQYLMWMKRKQILKSHIQAPFDNNSNWEERAFAEDAARILGGCIWPPRSYSCHFCKREFRSAQALGGHMNVHRRDRARLKQSHSHHNEALHYHHKNDFIATSSLSPSRPSTQENCCQPAMLSPYSASISWGHHMGCPDSEPKGLVNAKEDFLKGLDCNDYVETSLSVGQNLVFGQKLPTDSCGDESISYKRPKTSISSLPVFLKPCSTNDRCLTFQSAEFVLGLKPGMEDLDLELRLGKPQKV 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi106g00009 246 PANTHER OS07G0101800 PROTEIN 25 244 - -
Sebi106g00009 246 Pfam C2H2-type zinc finger 53 77 - -
Sebi106g00009 246 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Sebi106g00009 246 SUPERFAMILY beta-beta-alpha zinc fingers 50 80 IPR036236 -
Sebi106g00009 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi106g00009 Sebi-Chr106 247931 248786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi106g00009 1 246 C2H2 Transcription Factor Family AT5G06070 35.361 4.12e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi106g00009 zf-C2H2_6 3.7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi106g00009 - - aprc:113851273 398.667