Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi106g00002 ATGCTTCTTCTCTGTTTCCTGATTCTTCTGACCTCAAACCCTGTAAAATCCCAGCATGATGAGTTGTTCTTTGATGGGTTCCATGGTGCTGCAACCAACATAAGCTTAAACGGAGTTGCAGTGATTGAGCGCAGGGGCATACTTCGCTTAACAAACGACACTCAAAGAGTAATTGGGCATGCGTTTTATTCAACCCCAATCCAGTTCAAGAACTCTTCCACCAACGCCAAAGTTTTCTCCTTTTCCACTGCTTTTGCTTTTGCAATAATCCCCCAGTACCCAAAACTTGGTGGACATGGCTTTGCCTTCACAATTTCTCGCTCCAAGGTGCTTCCAGGTGCATATCCCAGCCAGTACCTGGGCCTCCTCAACCCAAACGATGTGGGGAACTTCTCAAACCACCTTTTCGCTGTAGAATTCGACACTGTCCAAGACTTCGAATTCAATGACATCAATGGCAACCATGTGGGTATCAACCTGAATAACATGGCATCCAACAAATCAGTTGAAGCTGGTGTTTTCTCTGATGGGTCAAAGAATAAGCAAGACCTCAATTTGAAGAGTGGCAAGGTGATTCAAGCATGGGTGGACTATGATTCCCCTAGGAATCAATTGGAAGTTAGACTCTCCCTAACTTCTACAAAACCCACTTCCCCAATCTTATCATACCAAGTGGATCTCTCACCAATTCTAGAAGACTCTATGTATGTGGGGTTCTCTGCTTCAACTGGGTTGCTTGCGAGTTGGCACTATATCTTAGGTTGGAGCTTCAAGATAAATGGAGAGGCAAAAACCCTGTCTTTGGAAAATCTCCCTTCGCTCTCTGCACACAGCAACACTAAAAAAGCCTTAATCTTGGGACTCTCTCTTACCGTTACGATTCTAATACTTGCCACAATTGGATTTCCCTACAAAGAACTGAAACAAGCCACAAGAGGATTCAAAGACAAGAACCTTCTCGGTTTCGGTGGATTCGGTAAAGTTTACAAAGGGGGTACTCCCAAATTCCAACACCGAAATCGCCGTGAAGCGAATTTCCCACGAATCAAAACAAGGATGGCAACAATTTATCTCAGAAATCGCCACCATTGGCAGGCTCCGCCACAGGAACCTTTCTACGATTTCATGCACAACGGTAGCTTAGACAAGTACCTGTTCGATGAAGAACCAAGAGGAAAATTGAGCTGGGAGCAAAGGTTCAAGGTCATAAAAGGGGTGGCTTCAGGGCTTGTTTATTTGCACGAGGAATGGGAACAAACGGTGATTCACAGAGACATTAAAGCAGGGAACGTTCTTTTGGATGCTGAAATGAATGGTAGGCTCGGGGACTTTGGTTTGGCGAAGCTATACGATCATGGTTCGAACCCAAGCACGACGAGGGTTGTGGGAACGTTGGGGTATTTGGCGCCTGAGCTCACGCGCACGGGGAAACCCACGACGAGTTCTGATGTGTTTGCGTTTGGCGCGTTGTTGTTGGAGGTCGTGTGTGGGAGAAGGCCCATTGAGCCCAAAGCGTTGCCGGAGGAGCTTATTTTGGTGGATTGGGTGTGGGATCGGTGGCGCGTGGGGGCGGCGTTGGAGGTTGTGGACCCCAAGTTGGGTGGGATTTTCGATGAGGTGGAGGCGATGTTGGTGATACAGGTGGGGTTGTTGTGCTCCGATGAGAATCCGGAAGCGAGGCCCACCATGAGGCAGGTGGTGAGGTACTTGGAAGGGGAGGTGCCGCCGCCGGAGCTGCAGGCGTTTGATGGGAAGAAGGGTGGTGGGGTCGCCGTTAGTGGCGGTGGTGAGTTTGACGATTTTGTGCATTCGTATCGGACGTCGTTTTATGACAGAGCGAATACGTGGTCGTCGGTGGGTGATGACGTGGAGTGTGGATCTGCTTCGTCTCTCTCTCTTTCCGGTGCCAGGGAGGAGGGTAGGTAG 1926 0.4896 MLLLCFLILLTSNPVKSQHDELFFDGFHGAATNISLNGVAVIERRGILRLTNDTQRVIGHAFYSTPIQFKNSSTNAKVFSFSTAFAFAIIPQYPKLGGHGFAFTISRSKVLPGAYPSQYLGLLNPNDVGNFSNHLFAVEFDTVQDFEFNDINGNHVGINLNNMASNKSVEAGVFSDGSKNKQDLNLKSGKVIQAWVDYDSPRNQLEVRLSLTSTKPTSPILSYQVDLSPILEDSMYVGFSASTGLLASWHYILGWSFKINGEAKTLSLENLPSLSAHSNTKKALILGLSLTVTILILATIGFPYKELKQATRGFKDKNLLGFGGFGKVYKGGTPKFQHRNRREANFPRIKTRMATIYLRNRHHWQAPPQEPFYDFMHNGSLDKYLFDEEPRGKLSWEQRFKVIKGVASGLVYLHEEWEQTVIHRDIKAGNVLLDAEMNGRLGDFGLAKLYDHGSNPSTTRVVGTLGYLAPELTRTGKPTTSSDVFAFGALLLEVVCGRRPIEPKALPEELILVDWVWDRWRVGAALEVVDPKLGGIFDEVEAMLVIQVGLLCSDENPEARPTMRQVVRYLEGEVPPPELQAFDGKKGGGVAVSGGGEFDDFVHSYRTSFYDRANTWSSVGDDVECGSASSLSLSGAREEGR 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi106g00002 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Sebi106g00002 641 PANTHER - 12 575 - -
Sebi106g00002 641 FunFam L-type lectin-domain containing receptor kinase S.4 376 582 - -
Sebi106g00002 641 Pfam Legume lectin domain 23 271 IPR001220 GO:0030246
Sebi106g00002 641 ProSiteProfiles Protein kinase domain profile. 314 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi106g00002 641 Gene3D Phosphorylase Kinase; domain 1 296 366 - -
Sebi106g00002 641 SUPERFAMILY Protein kinase-like (PK-like) 301 577 IPR011009 -
Sebi106g00002 641 Pfam Protein kinase domain 374 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi106g00002 641 SUPERFAMILY Concanavalin A-like lectins/glucanases 19 274 IPR013320 -
Sebi106g00002 641 Gene3D Transferase(Phosphotransferase) domain 1 376 582 - -
Sebi106g00002 641 Gene3D - 21 268 - -
Sebi106g00002 641 SMART serkin_6 314 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi106g00002 641 CDD lectin_legume_LecRK_Arcelin_ConA 24 261 IPR001220 GO:0030246
Sebi106g00002 641 FunFam L-type lectin-domain containing receptor kinase S.4 18 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi106g00002 Sebi-Chr106 47101 49145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi106g00002 15 635 Receptor kinase-like Gene Family AT3G55550 52.717 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Sebi106g00002 Lectin_legB 4.7e-75 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi106g00002 - - gmx:100787552 821.617