Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1069g00002 ATGGAGAAGGCGAGAGGCATGAGAAAAGGCGCATGGACATATGAGGAAGACAAGCTACTCAAGGCTTGCATTAACAAGTATGGGGTAGGAAAATGGCATTTGGTTCCTGAAAAAGCAGGATTGAACAGGTGTCGGAAAAGTTGTAGATTGAGGTGGTTGAATTATTTAAGTCCCAACATCAACAGAGGAAGCTTTGCTGAGGATGAAGTTGATATGATTCTAAGGTTACATAAACTCCTAGGGAACAGATGGTCATTGATTGCCGCAAGGCTTCCGGGTAGGACAGCTAACGATGTGAAGAACTACTGGCACACACACTTAAGCAAGAAGAAGGTGACCTCTAATTATAACATGGAAGACAAGAAAGAAAAGGAGAAACCAATAAAGGAAACCATGAAACCTCATGAAGTTATAAAACCTCGACCTCGAACTTTTTCAAATAATTCACCATGGTTGAAGGGGAAACACATTCTTGCAAATGATGGTGATGGTGTAATTAGAGAGTGTGCTATGCCTGTAGTGGCTTCAAATAATGATAATGTTCCAACAGAGACAACTATGCTCCCACTTGGTGGTGATAGAGATTGTGATGCCGCACAGTCGTCTGCAATGTGGTGGGAGAGTTTGTTGAACTTTGATGGCGATGATGAGAAAGTTGGCACATGTTCTTTGTCAAATGAGAATTCCATCTTGGAACTTCCAAATGTGGAGAACTTCTTCACCCAAGGCCCCACTGATGGTACTGACTGTTGCTGGGATTCCAACCTTTGTGATTTTGATTCTCTTTGGGATCTTTAA 798 0.4211 MEKARGMRKGAWTYEEDKLLKACINKYGVGKWHLVPEKAGLNRCRKSCRLRWLNYLSPNINRGSFAEDEVDMILRLHKLLGNRWSLIAARLPGRTANDVKNYWHTHLSKKKVTSNYNMEDKKEKEKPIKETMKPHEVIKPRPRTFSNNSPWLKGKHILANDGDGVIRECAMPVVASNNDNVPTETTMLPLGGDRDCDAAQSSAMWWESLLNFDGDDEKVGTCSLSNENSILELPNVENFFTQGPTDGTDCCWDSNLCDFDSLWDL 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1069g00002 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
Sebi1069g00002 265 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Sebi1069g00002 265 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Sebi1069g00002 265 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 133 - -
Sebi1069g00002 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Sebi1069g00002 265 CDD SANT 67 107 IPR001005 -
Sebi1069g00002 265 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Sebi1069g00002 265 CDD SANT 11 56 IPR001005 -
Sebi1069g00002 265 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Sebi1069g00002 265 Gene3D - 64 136 - -
Sebi1069g00002 265 Gene3D - 9 61 - -
Sebi1069g00002 265 FunFam Myb transcription factor 9 61 - -
Sebi1069g00002 265 SMART sant 8 58 IPR001005 -
Sebi1069g00002 265 SMART sant 61 109 IPR001005 -
Sebi1069g00002 265 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1069g00002 Sebi-Chr1069 70406 71773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1069g00002 2 213 MYB Transcription Factor Family AT1G66370 49.772 5.41e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi1069g00002 Myb_DNA-binding 4.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1069g00002 - K09422 tpra:123921946 289.656