Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1067g00016 ATGAATCTCAAAGCCTCCATGTCAACGGCAAGTTCAAGTTCTTCTCTCAAGTCCGGCGACGGCGTCTCCGACCAGTTTCCGGCGGGTCTCCGGGTACTGGTGGTGGATGATGACCCCACTTGCCTTATGATCCTTGAGAGGATGCTCCGTGCTTGCCTCTATGAAGATTCTTGCAACTATCTTTCTTTTGAAGTTTACTTTTTGATGCTTTTGATATGGTTTAACATGGCACAAGTTACAAAATGCAAGCGAGCAGAGGTTGCATTGTCTCTTCTGAGAGAAAACAAAAATGGCTTTGATATAGTTCTAAGTGATGTTCATATGCCAGACATGGATGGATTTAAACTTTTAGAGCATATTGGGTTGGAGATGGACCTTCCGGTTATAATGATGTCAGCTGATGATGGGAAGAATGTGGTAATGAAGGGTGTGACACATGGTGCTTGTGATTACCTGATTAAACCTGTGCGTATTGAGGCTTTGAAGAATATATGGCAGCATGTGGTTCGGAAGAGAAAGAGTGGGTGGAAAGATCTGGAGCAATCAGGTGGCACAGAAGAAGGAGATCGACAGCAAAAGGCATTTGATGATGCAGATTACTCATCCTCAGCGAATGAAGGTAAAAGCAACTCAAAAAAGAGGAGGGATATTGAGGATGAAGATGGAGAGGACAGGGAGGATACTTCCTCGTTAAAGAAGCCGCGGGTTGTTTGGTCTGTTGAGCTTCATCAACAGTTCATGGCTGCTGTGAATCAACTAGGAATTGATAAGGCTGTTCCTAAAAAGATTCTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCTAGTCACCTCCAGAAATACCGTTTGTATCTTCGAAGGGTGAGTGGAGTTTCCCAGCAGCAGAGCAACTTTAATAACTCCTTCATCAGCTCACAAGATTCAACATTTGGGGCAACTTCAATAAATGGAATAGATCTTCAAACTCTTCCAGTTTCTGGGCAGCTCCAAGCACAAAGTCTAGCCAAGCTTCAAGCAGCAGGACTTGGCAGGTCACTTGCAAAAGCAGGTATTCCCATGCCTCTAGTTGAGCAAAAGAACCTTTTCAGTTTTGAGAACTCAAAATTAAGATTTGGAGAAGGGCAACTGCAAAATTTGAGCAGCAGTAAACCAATGAACTTTCTTCATGGAATCCCTACCAACATGGAGCCAAAGCAGTTTGCCAATTTGCACCAGTCTACCCAATCCCTTGGAAACTTTAATATGCGATTCAATGCTTCTGCTGTGCAGAGAAACCCCTTGTTGATGCAGATATCTCAGTCTCAACCAAGAGGTCAGATGCTAAGTGAAAATAGTGGTTCTCATGTTAATAGGTTTTCATCATCTTTGGTGCAGCCTACAGGACCAAATGGAATATCTAATGGTTTTCTAGGTAATGGGATTGCTGATACCAGCAACATATCTGCTGCCTATAATCCAGTTCCACAAAGGTCTTCATTGTTGAGTTTTCCCATGAATCAAACCACTGAAATGCCAGTGAGTAGTTTCCCTCTTAGAAGCACTCCAGGCATATCCAGTATCACTACAAAAGGCATGTTTCATGAGGAAGTAGGTACTTCAGGAATTAAAGGATCTAGTGGATTTGCTCCAAGTTATGATATTTTTAATGAACTCCATCAGAAATCCCATGATTGGGACTTACCAAACACTGGCCTGACCTATGATGCTTCTCAGCATGCAAATCCTTTACAAACTAACATTGATGACTCACCATCAACTTTAGTCCATCAAGGCTTTTCCTCTATCCAACAAACTGGACAAAATAGAGATGCTACTTTGATTGGAAAAGCTATGATCTCAATAGGTGAAGGCATGAATCAAGGTAATCTCCAAAATGCCAGTCAAGACCTCAATTCGCTTCTTGTTGACAATTCAGTAAGGATTAAGGCTGAAAGTAATCCTGATCCAAGCTCCCAGATTAACCTCTTCTCTGAGCAATATGGACAGGAGGATCTTATGAGTGCACTTCTGAAACAGCAAGAAGGCATTGGACCAGTTGAAAATGAGTTTGACTTCGATGGATATTCCATAGACAACATTCCAGTTTAG 2097 0.4225 MNLKASMSTASSSSSLKSGDGVSDQFPAGLRVLVVDDDPTCLMILERMLRACLYEDSCNYLSFEVYFLMLLIWFNMAQVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKSGWKDLEQSGGTEEGDRQQKAFDDADYSSSANEGKSNSKKRRDIEDEDGEDREDTSSLKKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRVSGVSQQQSNFNNSFISSQDSTFGATSINGIDLQTLPVSGQLQAQSLAKLQAAGLGRSLAKAGIPMPLVEQKNLFSFENSKLRFGEGQLQNLSSSKPMNFLHGIPTNMEPKQFANLHQSTQSLGNFNMRFNASAVQRNPLLMQISQSQPRGQMLSENSGSHVNRFSSSLVQPTGPNGISNGFLGNGIADTSNISAAYNPVPQRSSLLSFPMNQTTEMPVSSFPLRSTPGISSITTKGMFHEEVGTSGIKGSSGFAPSYDIFNELHQKSHDWDLPNTGLTYDASQHANPLQTNIDDSPSTLVHQGFSSIQQTGQNRDATLIGKAMISIGEGMNQGNLQNASQDLNSLLVDNSVRIKAESNPDPSSQINLFSEQYGQEDLMSALLKQQEGIGPVENEFDFDGYSIDNIPV 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1067g00016 698 MobiDBLite consensus disorder prediction 176 196 - -
Sebi1067g00016 698 Pfam Response regulator receiver domain 76 163 IPR001789 GO:0000160
Sebi1067g00016 698 Gene3D - 30 185 - -
Sebi1067g00016 698 CDD REC_typeB_ARR-like 32 169 - -
Sebi1067g00016 698 PIRSF RR_ARR_type-B 75 690 IPR017053 GO:0003677|GO:0003700|GO:0009736
Sebi1067g00016 698 PIRSF RR_ARR_type-B 6 58 IPR017053 GO:0003677|GO:0003700|GO:0009736
Sebi1067g00016 698 ProSiteProfiles Response regulatory domain profile. 31 169 IPR001789 GO:0000160
Sebi1067g00016 698 NCBIfam myb-like DNA-binding domain, SHAQKYF class 233 286 IPR006447 GO:0003677
Sebi1067g00016 698 MobiDBLite consensus disorder prediction 1 21 - -
Sebi1067g00016 698 Pfam Myb-like DNA-binding domain 235 285 IPR001005 -
Sebi1067g00016 698 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 232 289 IPR017930 -
Sebi1067g00016 698 FunFam Two-component response regulator 229 292 - -
Sebi1067g00016 698 SUPERFAMILY Homeodomain-like 231 290 IPR009057 -
Sebi1067g00016 698 Gene3D - 230 292 - -
Sebi1067g00016 698 PANTHER TWO-COMPONENT RESPONSE REGULATOR 30 378 IPR045279 GO:0009736
Sebi1067g00016 698 SMART REC_2 30 165 IPR001789 GO:0000160
Sebi1067g00016 698 SUPERFAMILY CheY-like 29 173 IPR011006 -
Sebi1067g00016 698 MobiDBLite consensus disorder prediction 176 230 - -
Sebi1067g00016 698 MobiDBLite consensus disorder prediction 208 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1067g00016 Sebi-Chr1067 84489 87729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1067g00016 87 698 Response Regulator Gene Family AT3G16857 50.689 0.0 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Sebi1067g00016 Response_reg 3.3e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1067g00016 - K14491 gmx:100809583 998.423