Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1066g00004 ATGGAGAATGACACAAACACCCCTACTTCCTCTCCCCCATTTTCTCACTCTTCTACTACTCCTTCTCCATCTTCCCCTCCACAACCACAGGTTATCATGAGCCCCTGTGCTGCTTGCAAGATTTTGAGGCGAAGATGTGCAGAGAAATGTGTCTTGGCACCTTATTTCCCTCCCACTGAACCTGCCAAGTTTACCATTGCACACCGTGTCTTCGGTGCCAGCAACATCATCAAGTTCTTACAGGAACTTCCAGAGTCTCAAAGAGCTGATGCAGTGAGCAGCATGGTTTATGAGGCTGGTGCAAGAATAAGAGACCCTGTATATGGATGTGCAGGTGCAATTTGCCAGCTCCAAAAGCAGGTCAATGAGCTTCAAGCACAATTAGCAAAGGCACAAGCTGAGATTGTAAACATGCAATTGCAACAAGCCAATCTTGTGGCTCTAATTTGCATGGAAGTGGCAAAATCTCCACAGGAATCACCTCAACAGTCAGTGGACAACTTCATTTTAAGTCCTCCCCATAGCAGTAGTGGCTATCAAAACAGTCTTAACTTCTTTGAGGAGAACACCAGCCTAAACTCTTTGTGGGAGCCTCTTTGGACATGA 606 0.462 MENDTNTPTSSPPFSHSSTTPSPSSPPQPQVIMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEAGARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAEIVNMQLQQANLVALICMEVAKSPQESPQQSVDNFILSPPHSSSGYQNSLNFFEENTSLNSLWEPLWT 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1066g00004 201 ProSiteProfiles LOB domain profile. 34 135 IPR004883 -
Sebi1066g00004 201 MobiDBLite consensus disorder prediction 1 29 - -
Sebi1066g00004 201 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 34 161 - -
Sebi1066g00004 201 MobiDBLite consensus disorder prediction 1 18 - -
Sebi1066g00004 201 Pfam Lateral organ boundaries (LOB) domain 35 132 IPR004883 -
Sebi1066g00004 201 Coils Coil 114 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1066g00004 Sebi-Chr1066 140541 142135 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1066g00004 31 201 AS2 family AT2G28500 67.742 4.26e-80 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sebi1066g00004 LOB 2.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1066g00004 - - gmx:100789504 314.309