Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1065g00003 ATGAATAATGAGAATAATCCAGAGGAGTATCTATGGCAGAGCTTTGACTACCCTTGTGACACACAGTTGCCAGGGATGAAGCTTGGGATAGACTTAAGAACTGGTTTTGATCGACGCCTCACAGCATGGAAGAATGAAAATGACCCTTCACCTGGAAACATGACATGGGGCTTGTATCTCACCAATTGGCCTGAACCCATGCAGTGGATAGGGTCAAGAAAGTACTTTAACAGTGGTCCATGGAATGGAATTCAATATAGTGGCAAACCAACCCTGAAGCCTCACCCAGTTTTTGATTTCATTTATTTCTCTGATGAGAATGAAGTGTACTACATGTTCCGCCTTGTGAACAACTCTGTCAAAGCTAGGATGGTGTTGAATCAAACCAGCTATGTTCGCCAGCATTCTGTTTGGGTGGAAGCAGAGCAAAGATGGAAGGTGTATGGTTCACTGCCAAGAGATTTTTGTGATAAGTATGGTGCTTGTGGTCCTAATGGGAATTGTGATGAGAACAAGTTACCCAGTGCTTGTGATTGTTTGAAAGGGTTTAAGCCTAAATCACCTGTGGCATGGAATGGAATGGAGTATTCAGAAGGGTGTGTACGTGATAGACCACTGAACTGCAAAAATGATGGGTTTTTAAAGTATGTTAAGATGAAAGTGCCTGATACAGAATATAGTTGGTTGAACCAGAACATGACTCTGTTGGAGTGCAGAGCTAAATGCTTGAGCAATTGTTCTTGTACTGCTTATACAAACTCAGATATCAGAGGAGAAGGGAGTGGTTGTGCTTTGTGGTTTGGTGATCTTAATGACTTAAGGGTTCAACCGGATGCAGGGCAGGATCTGTATGTTAGAGTGCCTGCTTCTGAGTTGGAGACAAGCAATGGACGCAAGGTCAAGATAGGAATTGCAGTTGGAAGCACCATTGCAATATTATGTGGCCTGCTCTTAGCTTTCTATTTCATATGCAGAAGAAAGGCCACTACAAAAATAATAGACCATTTCAAAGAAGAACAGGAGGAGGAAGATCTGGAGCTTCCATTGTTTGACCTATCCAGTATAGCTCATGCCACAGATAACTTTTCAAACAGCATCAAGCTTGGAGAAGGTGGTTTTGGACCTGTATACAAGGGAACATTGGAAAATGGACAAGAAATTGCTGTTAAAAGACTTTCCAGAGGTTCTGGACAAGGGCTGAAGGAATTTAAAAATGAAATTAAATTAATAGCCAAACTTCAACACCGTAATCTTGTGAGGCTTTATGGATGTTGCATTCAGGATGAAGAGAAAATTTTGGGAGGAGACCAGAGTGCAGCAAATACACATAGGGTGGCTGGAACTTTTGGATACATGGCACCTGAATATGCAATAGATGGGAACTTCTCAGTGAAATCTGATGTCTTTAGCTTTGGCATTTTGTTGCTGGAGATAGTATCTGGAAAGAAAAATATAGGAAACCGTCATCAAGAGGAAAGTAAAAACCTTATTGGACATGCATGGGATTTGTGGATTGATGGGAGGCCTTTAGAGTTAATTGGTGAATATTCCAAAGATTCTTGCAATCTCTCTGAAGCACTGCGCTGCATCCATATCAGTCTTCTGTGTCTGCAGCAGCATCCACATGACAGGCCTAGCATGTCTTCTGTTGTTATGATGTTAGGTAGTGAAATTGGCTTGCCTCAGCCCAAACCACCAGCTCTATTTGTTGGAGAATATAAACATCAGGAATATTCTTCATCATATAAAAATGAGTTCCCTTCTGTCAATGAAGTGAGTATTTCACTTTTAGAAGCTCGTTAG 1803 0.4138 MNNENNPEEYLWQSFDYPCDTQLPGMKLGIDLRTGFDRRLTAWKNENDPSPGNMTWGLYLTNWPEPMQWIGSRKYFNSGPWNGIQYSGKPTLKPHPVFDFIYFSDENEVYYMFRLVNNSVKARMVLNQTSYVRQHSVWVEAEQRWKVYGSLPRDFCDKYGACGPNGNCDENKLPSACDCLKGFKPKSPVAWNGMEYSEGCVRDRPLNCKNDGFLKYVKMKVPDTEYSWLNQNMTLLECRAKCLSNCSCTAYTNSDIRGEGSGCALWFGDLNDLRVQPDAGQDLYVRVPASELETSNGRKVKIGIAVGSTIAILCGLLLAFYFICRRKATTKIIDHFKEEQEEEDLELPLFDLSSIAHATDNFSNSIKLGEGGFGPVYKGTLENGQEIAVKRLSRGSGQGLKEFKNEIKLIAKLQHRNLVRLYGCCIQDEEKILGGDQSAANTHRVAGTFGYMAPEYAIDGNFSVKSDVFSFGILLLEIVSGKKNIGNRHQEESKNLIGHAWDLWIDGRPLELIGEYSKDSCNLSEALRCIHISLLCLQQHPHDRPSMSSVVMMLGSEIGLPQPKPPALFVGEYKHQEYSSSYKNEFPSVNEVSISLLEAR 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1065g00003 600 CDD PAN_AP_plant 205 288 - -
Sebi1065g00003 600 Gene3D Phosphorylase Kinase; domain 1 335 432 - -
Sebi1065g00003 600 Pfam Domain of unknown function (DUF3403) 560 600 IPR021820 GO:0004674
Sebi1065g00003 600 ProSiteProfiles PAN/Apple domain profile. 208 288 IPR003609 -
Sebi1065g00003 600 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 327 435 - -
Sebi1065g00003 600 Pfam S-locus glycoprotein domain 76 187 IPR000858 GO:0048544
Sebi1065g00003 600 SUPERFAMILY alpha-D-mannose-specific plant lectins 6 49 IPR036426 -
Sebi1065g00003 600 Pfam PAN-like domain 208 273 IPR003609 -
Sebi1065g00003 600 SUPERFAMILY Protein kinase-like (PK-like) 345 583 IPR011009 -
Sebi1065g00003 600 Gene3D Transferase(Phosphotransferase) domain 1 433 564 - -
Sebi1065g00003 600 Gene3D Hepatocyte Growth Factor 206 281 - -
Sebi1065g00003 600 ProSiteProfiles Protein kinase domain profile. 362 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1065g00003 600 SMART ntp_6 208 287 IPR003609 -
Sebi1065g00003 600 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 434 558 - -
Sebi1065g00003 600 Pfam Protein tyrosine and serine/threonine kinase 367 431 IPR001245 GO:0004672|GO:0006468
Sebi1065g00003 600 Pfam Protein tyrosine and serine/threonine kinase 447 553 IPR001245 GO:0004672|GO:0006468
Sebi1065g00003 600 Pfam D-mannose binding lectin 3 44 IPR001480 -
Sebi1065g00003 600 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 207 287 - -
Sebi1065g00003 600 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 4 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1065g00003 Sebi-Chr1065 15583 18791 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1065g00003 316 600 Receptor kinase-like Gene Family AT4G23280 38.643 3.61e-58 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi1065g00003 PK_Tyr_Ser-Thr 3.2e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1065g00003 - - qlo:115977476 715.687