Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1063g00003 ATGGGTCTCTCAAATTTCCCGTGTTCAGCTGAAGGGGTGTTACCTGTGCTTGTGATGAACACGGTCCTTTCAGTGGCGCTGTTGAAGAACATGTTTAGATCCATGCTCCAAGTAATTGGTGGCTCTTATTATTCTCCTCCTTCTTCAGATGAGTCCCACATCGATGAGATTGAGAGTTGTTCAAGGGAAAGGAGGGTGTCAATTAGCCAGTACAAGTCATTGTGCCACAGCATAGGAAGAAAGATGGTTATGGTGGAGTGCTGCGTGTGTCTGTGTGGTTTTGAAGCCAATCAAGAGGTGAGCGAGTTGCCTTGTAAGCATTTCTTCCATAGAGGATGCTTAGACAAATGGTTTGATAACAAACATACCACTTGCCCTTTATGTCGTTCCAAGGACTAG 399 0.4511 MGLSNFPCSAEGVLPVLVMNTVLSVALLKNMFRSMLQVIGGSYYSPPSSDESHIDEIESCSRERRVSISQYKSLCHSIGRKMVMVECCVCLCGFEANQEVSELPCKHFFHRGCLDKWFDNKHTTCPLCRSKD 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1063g00003 132 SMART ringv_2 86 129 IPR011016 GO:0008270
Sebi1063g00003 132 SMART ring_2 87 128 IPR001841 -
Sebi1063g00003 132 SUPERFAMILY RING/U-box 86 130 - -
Sebi1063g00003 132 Pfam Ring finger domain 86 129 IPR001841 -
Sebi1063g00003 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 132 IPR013083 -
Sebi1063g00003 132 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Sebi1063g00003 132 PANTHER - 1 131 IPR044249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1063g00003 Sebi-Chr1063 29129 29527 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1063g00003 1 130 C3H Transcription Factor Family AT2G04240 32.680 2.72e-22 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1063g00003 K16285 - gmx:100811790 202.216