Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1062g00006 ATGGAACGTGGGGTTCTTGATGGTATCATCAATAGGCTGCTTGAAGTCAGAGGCAGACATGGGAAGCAGGTCCAGCTTTCTGAGGCTGAGATCAAACAGCTTTGTCTTGTCTCCAAAGATATCTTCTTGAAACAACCTAACCTCTTGAAACTCGAAGCACCAATTAAGATCTGTGGTGATATCCATGGTCAATATTCCGACCTTCTGAGACTTTTTGAGTTTGGTGGATTCCCTCCTCGTTCCAAGTACTTATTTTTAGGGGATTATGTTGATCGTGGAAAGCAAAGTCTAGAGACAATATGTCTTCTTCTGGCATATAAAATAAAATATCCTGAAAATTTTTTCCTTCTAAGGGGGAACCATGAATGTGCTTCCATAAACCGTATCTATGGATTTTATGATGAATGCAAAAGGAGATTCAATGTCAGGCTTTGGAAACAGTTTACAGATTGTTTCAATTGCTTGCCTGTAGCAGCTCTCATTGATGAAAAGATATTATGTATGCATGGTGGACTCTCTCCTGAATTGCACAATCTAAATCAGATAAAGAATTTGCCACGTCCTTGTCAAGTCCCTGAAAATGGTCTATTATGTGATCTCCTTTGGTCTGATCCTAGTAGTGACATTCAGGGTTGGGGAGAAAATGAACGTGGAGTTTCCTATACTTTTGGTGTTGACAGGGTCAAAGAATTTCTTCAAAAACATGATCTTGATTTGATTTGCAGAGCACACCAGGTTGTGGAAGATGGATATGAATTCTTTGCTAATAGACAACTTGTAACTATATTTTCAGCACCTAATTACTGTGGAGAGTTTGACAATGCTGGTGCTATGATGAGTGTGGATGAGACACTTGTGTGCTCTTTTCAAATATTGAAGCCTCTAGATAAAAGGCCTAAGTTTAGCTTTGGGAGCATGACTTCAATTAAGCATAATTCTCCAACAAAAAACAAGCAAGCATTTCTTGGTGCTAAAGCATGA 981 0.3904 MERGVLDGIINRLLEVRGRHGKQVQLSEAEIKQLCLVSKDIFLKQPNLLKLEAPIKICGDIHGQYSDLLRLFEFGGFPPRSKYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKQFTDCFNCLPVAALIDEKILCMHGGLSPELHNLNQIKNLPRPCQVPENGLLCDLLWSDPSSDIQGWGENERGVSYTFGVDRVKEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLVCSFQILKPLDKRPKFSFGSMTSIKHNSPTKNKQAFLGAKA 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1062g00006 326 SMART pp2a_7 26 296 IPR006186 GO:0016787
Sebi1062g00006 326 FunFam Serine/threonine-protein phosphatase 1 303 - -
Sebi1062g00006 326 Gene3D - 2 305 IPR029052 -
Sebi1062g00006 326 SUPERFAMILY Metallo-dependent phosphatases 18 298 IPR029052 -
Sebi1062g00006 326 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Sebi1062g00006 326 CDD MPP_PP1_PPKL 5 294 - -
Sebi1062g00006 326 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Sebi1062g00006 326 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Sebi1062g00006 326 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Sebi1062g00006 326 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Sebi1062g00006 326 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Sebi1062g00006 326 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Sebi1062g00006 326 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Sebi1062g00006 326 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Sebi1062g00006 326 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Sebi1062g00006 326 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 10 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1062g00006 Sebi-Chr1062 41074 44330 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1062g00006 33 239 Calmodulin-binding Proteins AT5G63870 31.855 8.18e-30 113