Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1061g00006 ATGGGGAGGGCTCCTTGCTGTGACAAAGCCACCGTCAAGAGAGGTCCATGGTCGCCTGAAGAAGACGCCAAACTCAAGACTTACATCCAACAGTACGGCACCGGTGGCAACTGGATTGCCCTTCCACACAAAATAGGCCTGAAAAGGTGGTCGATTATAGCAGCGCAATTACCAGGGCGTACAGATAATGATATAAAGAACTACTGGAACACTAAATTGAAGAAGAAGCTTCTAGCTCGCCGAGTTAGGCAAGAGATCAAGAGAGAAAGTAATTTGGTGTTACCTATCAGCCAAACTGATCCCTATTATTATTATCCTACACAGCAACACTACTCCTTGTCCACTCCAGTGGCAAATGCTGCTACTTCCATCATCCAAGACTATAATCAAACAGCATCACTAGAAGATCATCAACAGCCATACACCATGAATTCATCACAATACTCATGTGACATCATTTCCTTCCCACAAGACCCATCCACAATGAATAACATCATAACCTCCACAGCAAACATATTTCAAGGGTTTGGGAACTTCCCCATCCCCAATGAGTTGAATTACGAGGAGCAACAACAAATAGATGATGGTGGATCAGTGGAGGTTTTTCATGGAATGGAGGGTAATGGTAGCACGAGTACGGCTTCAACAGAAAGCAATAATAATTGGGGAGATATAAGCTCTTTGGTTTACTCACCTCTGCTTTCTGGCTATGAAGGTGGCCAGGCAATGCCTCATGCTGTTACTTTCGAGGAGTGTAGGTACTTTGGGATGCAAGCGCAATAA 783 0.4444 MGRAPCCDKATVKRGPWSPEEDAKLKTYIQQYGTGGNWIALPHKIGLKRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLARRVRQEIKRESNLVLPISQTDPYYYYPTQQHYSLSTPVANAATSIIQDYNQTASLEDHQQPYTMNSSQYSCDIISFPQDPSTMNNIITSTANIFQGFGNFPIPNELNYEEQQQIDDGGSVEVFHGMEGNGSTSTASTESNNNWGDISSLVYSPLLSGYEGGQAMPHAVTFEECRYFGMQAQ 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1061g00006 260 CDD SANT 16 73 IPR001005 -
Sebi1061g00006 260 PANTHER OS09G0431300 PROTEIN 49 219 - -
Sebi1061g00006 260 Pfam Myb-like DNA-binding domain 14 71 IPR001005 -
Sebi1061g00006 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 77 IPR017930 -
Sebi1061g00006 260 SMART sant 13 75 IPR001005 -
Sebi1061g00006 260 Gene3D - 11 78 - -
Sebi1061g00006 260 ProSiteProfiles Myb-like domain profile. 9 73 IPR001005 -
Sebi1061g00006 260 SUPERFAMILY Homeodomain-like 3 79 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1061g00006 Sebi-Chr1061 84163 85255 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1061g00006 1 231 MYB Transcription Factor Family AT3G49690 35.077 2.71e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sebi1061g00006 Myb_DNA-binding 1.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1061g00006 K09422 - gmx:100791406 231.876