Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1060g00005 ATGTTTTCGTTCATCGATCTCGCAAAGCTATGTATGGGAGGTGCGATGCTCTCCACCACACACGAGATGTTCGATGTTCAGTGTCATCGAGGTATTCAAGAATTGGTTTCTTCGAATTCTACTATGCCTGGTTATATGTGTGCTTCTGATGCACATTCTGGTTATATGCGTGCTCTATATGTTCGTCAAAATCCTGTGTCAAATTCTGCACTCATGTTGTTTGATGAAATGACACAATGTGTATCCCCTGCTGTTAGCCTGCTTAATATACTTCCTGCTACTGCTCCCATGGATGATTCATTGCTTAGAAAAGAGGCTCATGATTTTTCTGTTGGAACTGGCTCGGTGATGGTTCCATTTATGGCCACTGACTCATTTGTTTGGACCAACATGTGCAAGTTCACCACCAATGCTCGTCTCGGTCCACCCCTTGAGAATGGGGCTGGGGTTTTCTCCGATACAGGATGGTATGCTACTAACCAATTTAATGTTGATGTGATTTTCGGTAATAGGATGAAGCAGTATGAGTGTTTGACTCATGATTCTTACAACGCTACTGCTATTTTTGTTCCCTTTTATGCTGGTTTTGCTTTCATACTTGCTGTCGCTTTTAGAATGGAACAATTAGATTGGAATAGCTCTAGCAGCCTAGCTAAATCATTGGGAACAGTAGTATCAATTGATGGTGCTTTTATTCTGACATTGTATAAAGGCCATGCACTTTTGATGGGACTATCACCTGAAAACTCATCTCAGCAGTCGGTTTCCTCACAAAATTCCAATTGGATACTCGGAGAATTATTTCTTGTTGTTAACTATGTGATGGTTGTTGCATTTCAACTTGGTAATTGTGTGATCCCAGTTTCTCATGAATATACAACAAAGTATTTGCAGAATTATTCATTTACCAAGGTTGATGTTCTCCTTTTGGAAGATGTACCTAAGCATGGTGCTGAGCTGGAAGGTGTTGATATTCCTAGTGATGTTACAGGAAATCCAACTTCATGTGCTGAAATGGCTACATATCTAATGTTGGGTCTCCTCTGTAAGCAAAATGAAATGCAGATTTTCATACAACAGAAGAAGCTTGGAAGTAATGAGAAAATTGTGTTGGTAGGATCAGTGTCAGCTATTGATCCTGGTGCAGCAATTGTGTTTCTTACTTTCATGGTTGATGAATTGTTGGAGGTGTTTCGCGTTTTGAATTGTCAAAATTATTTCAAATATGTGGAGGGTTACAATGTGATGGTGTCGTTCTTGTGCAATGCTGGGAGAGTTAAAGAAGGGTATGCTGTTCTCCAGGAGATGAAGAAGAAAGGGATCTGCCCCAATGTTGAGTCTTATAATTATATCATGGAAGCATGTTGCAAGGAGGATATGTTGCGCCCTGTACTATGCTACCAATTCAAAGTTGGAGATCTTGATGCTTGGGGGCTTCCCACTTCAGGAAATTCACATATCTATGACAAATGGTCCAAATATCACAACCTCCACATTGGTGATTCACTCTTGTTTCTATACCCACCAAGTCAAGATTCAGTGATTCAAGTAACAGAGGAGTCCTACAAGAGCTGCAACCTTAAAGATCCGATCTTGTACATGAACAATGGGAATTCATTGTTCAACATTACATCAGAGGGGGATTTCTACTTCACTAGTGGTGAAGCTGGCCATTGTCAAAAGAATCAGAAGCTTCATATATTAGTAGGTAATGGCACGGGAAATGTGAATAATGCATATGCTCCAACTTCATTGCCTGCATACGCACCCTCCTATCCAACTGTTTTTGGTACCATTCCAGTTTCTCCTTCTTCCTCACATCAGTTATATTCAAATTTTCCACTGGTCATTGTTGGATTCTTGATGTGTATACTGATCTCTACCGTAATGTGA 1893 0.4031 MFSFIDLAKLCMGGAMLSTTHEMFDVQCHRGIQELVSSNSTMPGYMCASDAHSGYMRALYVRQNPVSNSALMLFDEMTQCVSPAVSLLNILPATAPMDDSLLRKEAHDFSVGTGSVMVPFMATDSFVWTNMCKFTTNARLGPPLENGAGVFSDTGWYATNQFNVDVIFGNRMKQYECLTHDSYNATAIFVPFYAGFAFILAVAFRMEQLDWNSSSSLAKSLGTVVSIDGAFILTLYKGHALLMGLSPENSSQQSVSSQNSNWILGELFLVVNYVMVVAFQLGNCVIPVSHEYTTKYLQNYSFTKVDVLLLEDVPKHGAELEGVDIPSDVTGNPTSCAEMATYLMLGLLCKQNEMQIFIQQKKLGSNEKIVLVGSVSAIDPGAAIVFLTFMVDELLEVFRVLNCQNYFKYVEGYNVMVSFLCNAGRVKEGYAVLQEMKKKGICPNVESYNYIMEACCKEDMLRPVLCYQFKVGDLDAWGLPTSGNSHIYDKWSKYHNLHIGDSLLFLYPPSQDSVIQVTEESYKSCNLKDPILYMNNGNSLFNITSEGDFYFTSGEAGHCQKNQKLHILVGNGTGNVNNAYAPTSLPAYAPSYPTVFGTIPVSPSSSHQLYSNFPLVIVGFLMCILISTVM 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1060g00005 630 Gene3D Tetratricopeptide repeat domain 385 467 IPR011990 GO:0005515
Sebi1060g00005 630 FunFam Early nodulin-like protein 1 466 573 - -
Sebi1060g00005 630 CDD OsENODL1_like 467 569 IPR041846 -
Sebi1060g00005 630 NCBIfam pentatricopeptide repeat 413 445 IPR002885 -
Sebi1060g00005 630 SUPERFAMILY Cupredoxins 466 569 IPR008972 -
Sebi1060g00005 630 Gene3D - 468 580 IPR008972 -
Sebi1060g00005 630 PANTHER BLUE COPPER PROTEIN 465 577 IPR039391 GO:0009055
Sebi1060g00005 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Sebi1060g00005 630 Pfam Plastocyanin-like domain 486 562 IPR003245 GO:0009055
Sebi1060g00005 630 ProSiteProfiles Phytocyanin domain profile. 467 571 IPR003245 GO:0009055
Sebi1060g00005 630 Pfam PPR repeat family 411 457 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1060g00005 Sebi-Chr1060 149334 152793 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1060g00005 469 601 Phytocyanin Superfamily AT1G64640 58.647 7.85e-47 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1060g00005 - - gmx:100783186 265.774