Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1060g00001 ATGGATTCTGAAGACCAAAAAGTTAAGCTGGATGATGAGTTACATCAGGATGATGATAATCGAGAAGGGTCGGATTCTGAGAAACCGTTGAAAAAGATAGAGAAGTTGAACTCTTCACCTTCTGAGTTTTGTAAAGCTAGTGATAAATTAAAGGGTGATGAAGAAGATATTTCTACAAGCAAGAAAGCAGCATCATCATCAGGAGTCCACCCGTGTGAGTTTTGTGACAAGGTTTTCAGCTCTGGAAAAGCACTAGGTGGCCACAAAAGACTCCACATTCAAGCTCAAAGGAAAGAGGCTCATAATAATAACAATAATGAGATGAAGTCATGCGATAATAAATTGATCAAATGTTGTGTTTGCATGAAGGATTTTCCATCTGAAAAGTCATTGCATGGCCATTTGAGATCCCACCCTGAAAGGTTTTGGAGGGGTGTTCACCCTCCTGAACCATCATCTCAAAACCAAAATTCAAACTACTCCATGGAAGAAAATAATGATGAACATGGTAATGGTGGCCAGATTTTAAATGCAACAATGGAAGCAGCTATTGATATATCAAAGTATTTGCCACTAAGCTGGAAGAAGACGGATAAAAGAGGTCGAGCATGTACTTATAGCAAAGAGGATATTAATGCTGCTCAAATACTTATGTTTATGTCTCGGGATAATAAGAAAAGGTCACATTCAATGGTGAATCCTAAATTATCTCTACATCACAACCTCAATGAGAATGGTGATGAGTGTGATAAGAATAATGGAGAGAAGAGTATGAAGGATGAGCTCTTTGTTGGTGGCAACTGGAAGTGTGTAAGTATCTTACCCCCGAAACTCAGTAGCCCAAGTAGTACTCTATTAAGCAAGGGGGCCTGTTTACTAATTGAGAGGCCAAGAATTGAGACCCCATCTCCATTACCAACTTTTAAGGTTCGGAAAGAGAAACTGGGGGACTGA 954 0.3941 MDSEDQKVKLDDELHQDDDNREGSDSEKPLKKIEKLNSSPSEFCKASDKLKGDEEDISTSKKAASSSGVHPCEFCDKVFSSGKALGGHKRLHIQAQRKEAHNNNNNEMKSCDNKLIKCCVCMKDFPSEKSLHGHLRSHPERFWRGVHPPEPSSQNQNSNYSMEENNDEHGNGGQILNATMEAAIDISKYLPLSWKKTDKRGRACTYSKEDINAAQILMFMSRDNKKRSHSMVNPKLSLHHNLNENGDECDKNNGEKSMKDELFVGGNWKCVSILPPKLSSPSSTLLSKGACLLIERPRIETPSPLPTFKVRKEKLGD 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1060g00001 317 MobiDBLite consensus disorder prediction 142 173 - -
Sebi1060g00001 317 Pfam C2H2-type zinc finger 117 140 - -
Sebi1060g00001 317 Pfam C2H2-type zinc finger 69 92 - -
Sebi1060g00001 317 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Sebi1060g00001 317 SMART c2h2final6 116 138 IPR013087 -
Sebi1060g00001 317 SMART c2h2final6 70 92 IPR013087 -
Sebi1060g00001 317 Gene3D Classic Zinc Finger 68 138 - -
Sebi1060g00001 317 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 96 246 - -
Sebi1060g00001 317 MobiDBLite consensus disorder prediction 149 173 - -
Sebi1060g00001 317 SUPERFAMILY beta-beta-alpha zinc fingers 69 138 IPR036236 -
Sebi1060g00001 317 MobiDBLite consensus disorder prediction 1 55 - -
Sebi1060g00001 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 97 IPR013087 -
Sebi1060g00001 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 116 138 IPR013087 -
Sebi1060g00001 317 MobiDBLite consensus disorder prediction 1 35 - -
Sebi1060g00001 317 ProSitePatterns Zinc finger C2H2 type domain signature. 118 138 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1060g00001 Sebi-Chr1060 37559 40145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1060g00001 70 154 C2H2 Transcription Factor Family AT2G26940 35.455 3.26e-15 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi1060g00001 zf-C2H2_6 0.00055 CL0361