Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi105g00019 ATGGCAGGTTCTGAATACACTCCCAACCACATTCCCGACCCAACGTATGTTCGCATTTTGGACACTACCCTCCGCGATGGGGAGCAGTCCCCTGGCGCTGCAATGACATGCAACCAGAAGCTTGAGATTGCACGCGAGCTGGCAAAATTGGGTGTGGACATCATTGAGGCTGGCTTCCCTTGTTCTTCAAAAGAAGACTTTTTGGCTGTCAAAATGATAGCTGAAGAGGTTGGGAACGTTGAAGGTGATGATGGGCATGTTCCTGTCATAGCTTCTGTCTCTAGGTGCAATGAGAAGGATATTGCAACTGCATGGGAGGCTGTGAAGTATGCGAAAAGACCAAGGCTTAGAACTTTTATAGCTACCAGTCCCATTCATATGGAGTTCAAGCTTAGAAAGACTAAAGATCAGGTTCTCCAGACTGCTAGGGATATGGTTAAGTTCGCACGGAGTTTGGGTTGCAATGACATCCAGTTCGGTGCTGAAGATGCTGCCAGATCGGACAAGGAGTTTCTTTATCAAATTTTTGGAGAAGTTATCAAGGCTGGGGCAACAACTGTTGCAATACCTGACACAGTGGGCATAACAATGCCATTCGAGTTTGGAAAACTGATTGCGGACATAAAAGCGAATACCCCTGGAATTCAGAATGTTATCATTGCAACTCATTGTCATAATGATCTTGGACTTGCTACTGCTAATACCATAGAGGGTGCACGTGCTGGTGCAAGGCAATTGGAAGTCACAATTAATGGAATTGGTGAAAGGGCCGGTAATGCCTCATTAGAAGAGGTTGTGATGGCCTTGACATGCAGGGGGAATCATGTCTTAGGTGGTATACATACACGAATTAATACAAGGCATATATTAAAGACAAGCAAAATGGTCGAAAAGTACTCTGGTTTGCATCTACAACCACATAAAGCTCTTGTGGGTGCTAATGCCTTTGTTCATGAAAGTGGCATTCATCAGGATGGTATGCTAAAACATAAAGGTACATATGAAATAATATCTCCTGAAGATATTGGTCTTGAAAGATCCACTAGAGCAAGTATTGTATTGGGGAAGCTCAGTGGCCGCCGAGCATTGAAAAAGCGACTTGAAGAGCTTGGTTACGATCTTAATGATGAAGAAGTTGAGAGTGTGTTTTGGCAATTTAAAGCAGTGGCGGACCGAAAAAAGAGAGTTACTGATGCAGACCTCAAAGCATTGGTATTAAATGAACCGATTCATGTAGAATCTATTTGGAAGCTCGGTGATTTGCAGGTGACTTGTGGAACTATGGATCTTTCAACCGCGACTGTCAAACTTGTTTCTCTTGATGGTAGCATGCATGTTGCTTGTTCTATTGGTACAGGACCAATGGATTCAGCTTACAAGGCTATTAATCTCATTGTAAAGGAACCAGTAAAAATCGTTGAGTACTCACTGAGTACAATCAAAGAAGGCATTAATGTGGTTGTCACTACTCATGTAGTGATTTGCAAGGAGAAAAACCATGTATCTACACATGCTTTTAATGGGGATACTGTTTATCCAACATTTAGTGGAACTGGAGCAGGAAGGGATGTTGTTGTTTCTAGTGTCGAGGCCTATCTTAGTGCACTAAACAAGATGTTAGGTGCAAAATCTTTCAATTCGAAACAAGGGTATTGGTATGAAGAAGGAGGATTTAGTAAAAAAGTTGGAGACAATAGCAAAATCTGGAACTTCAGGGAAAAGCAGGAGCTTCTAAGAAGCCTGGAGAAGACAAAAAACTCTCAAAAATTTGGAAAGGTCTCAGTCTGTGCATTTTATTCAATTTCAGGAGGTAAAGGGCTGCTGGTTGTGGAAGAAGCCTCTACCACAAAGCAGAAAAATGAGTTTGGCTTCCAAATTTGTCACAAGGTGATGTCTTTTCCTCTTACTACACCTTGTGCCCACAACTTCTACAAAGCCTATCTGGAGGGAGCCTTTTCTGGCCAAAGTTTCATTAGAAAGAGGGCATGTGAAAGTGGATGTACTTTAAGGGCACAAAAGAACATTATGAAATGCCCATCATGTTCAATTGACATAGCTGGGTTTCTTCAGAATCCTCAGAGTGATGTGATCCATATTCAGGTACCTTAA 2109 0.4225 MAGSEYTPNHIPDPTYVRILDTTLRDGEQSPGAAMTCNQKLEIARELAKLGVDIIEAGFPCSSKEDFLAVKMIAEEVGNVEGDDGHVPVIASVSRCNEKDIATAWEAVKYAKRPRLRTFIATSPIHMEFKLRKTKDQVLQTARDMVKFARSLGCNDIQFGAEDAARSDKEFLYQIFGEVIKAGATTVAIPDTVGITMPFEFGKLIADIKANTPGIQNVIIATHCHNDLGLATANTIEGARAGARQLEVTINGIGERAGNASLEEVVMALTCRGNHVLGGIHTRINTRHILKTSKMVEKYSGLHLQPHKALVGANAFVHESGIHQDGMLKHKGTYEIISPEDIGLERSTRASIVLGKLSGRRALKKRLEELGYDLNDEEVESVFWQFKAVADRKKRVTDADLKALVLNEPIHVESIWKLGDLQVTCGTMDLSTATVKLVSLDGSMHVACSIGTGPMDSAYKAINLIVKEPVKIVEYSLSTIKEGINVVVTTHVVICKEKNHVSTHAFNGDTVYPTFSGTGAGRDVVVSSVEAYLSALNKMLGAKSFNSKQGYWYEEGGFSKKVGDNSKIWNFREKQELLRSLEKTKNSQKFGKVSVCAFYSISGGKGLLVVEEASTTKQKNEFGFQICHKVMSFPLTTPCAHNFYKAYLEGAFSGQSFIRKRACESGCTLRAQKNIMKCPSCSIDIAGFLQNPQSDVIHIQVP 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi105g00019 702 PANTHER HOMOCITRATE SYNTHASE-RELATED 5 542 - -
Sebi105g00019 702 FunFam 2-isopropylmalate synthase 12 302 - -
Sebi105g00019 702 Pfam HMGL-like 17 296 IPR000891 GO:0003824
Sebi105g00019 702 Gene3D Aldolase class I 13 301 IPR013785 -
Sebi105g00019 702 NCBIfam 2-isopropylmalate synthase 17 537 IPR005671 GO:0003852|GO:0009098
Sebi105g00019 702 ProSitePatterns Alpha-isopropylmalate and homocitrate synthases signature 2. 220 233 IPR002034 GO:0019752|GO:0046912
Sebi105g00019 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 608 681 IPR013083 -
Sebi105g00019 702 FunFam 2-isopropylmalate synthase 1 chloroplastic 303 416 - -
Sebi105g00019 702 CDD DRE_TIM_IPMS 19 298 - -
Sebi105g00019 702 Gene3D - 423 540 IPR036230 -
Sebi105g00019 702 Pfam LeuA allosteric (dimerisation) domain 396 540 IPR013709 GO:0003852|GO:0009098
Sebi105g00019 702 SUPERFAMILY Aldolase 14 314 - -
Sebi105g00019 702 ProSitePatterns Alpha-isopropylmalate and homocitrate synthases signature 1. 24 40 IPR002034 GO:0019752|GO:0046912
Sebi105g00019 702 Gene3D - 304 419 - -
Sebi105g00019 702 SMART LeuA_dimer_2 395 540 IPR013709 GO:0003852|GO:0009098
Sebi105g00019 702 ProSiteProfiles Pyruvate carboxyltransferase domain. 17 290 IPR000891 GO:0003824
Sebi105g00019 702 Coils Coil 360 380 - -
Sebi105g00019 702 SUPERFAMILY 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 432 539 IPR036230 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi105g00019 Sebi-Chr105 624586 653712 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi105g00019 621 693 C2H2 Transcription Factor Family AT5G39550 57.534 2.85e-20 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi105g00019 K01649 - gmx:547778 823.542