Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1059g00004 ATGAAGACCAAGACACCATTGAAGCAGCTGAAGCTAGCGGTTCCTGCTCAAGAAAACACCCATTACATCCTTCCTCCTTCAGATGGTCAGGAGCTTGAATTTGACTTCTCACTGGACGACCTTGAGACCATCAAAGTAATTGGAAAAGGCAGTGGTGGTGTAGTACAACTTGTTCGTCATAAGTGGGTTGGGAAATTGTTTGCTCTAAAGGTCATTCAGATGAATATACAAGAGGATATACGAAAACAGATTGTTCAAGAATTGAAAATAAACCAAGCGTCCCAATGTCCACATGTTGTAGTTTGCTACCACTCATTTTATCATAATGGAGTTATATCTCTTGTATTAGAATACATGGACCGTGGTTCTCTAGCAGATATAATCAGACAAGTTAAAACCATTTTGGAACCATATCTTGCTGTGGTTTGTAAGCAGGTATTACAAGGCCTTGTCTACTTGCATAATGAAAGACATGTAATACACAGGGACATCAAGCCATCCAATCTACTAGTTAATCACAAAGGGGAGGTGAAGATTACTGATTTTGGTGTTAGTGCTATGCTGGCCAGCTCAATGGGCCAAAGAGATACATTTGTTGGAACTTATAATTACATGTCGCCAGAAAGAATCAGTGGGAGTACTTATGACTATAGTAGTGACATATGGAGTTTGGGCATGGTAGTGCTTGAGTGTGCCATAGGACGGTTCCCTTATATACAATCTGAAGATCAGCAAGCCTGGCCTAGTTTCTATGAGCTTTTGGCAGCAATTGTGGAAAGCCCCCCACCTTCTGCTCCACCAGATCAGTTCTCCCCGGAGTTCTGTTCATTTGTGTCATCCTGCATCCAGAAGGATCCTCGAGATAGATTGACATCCTTGGAGCTTCTGGGCCATCCTTTCATAAAAAAGTTTGAAGATAAAGATCTAGATCTTGGGATTTTGGTAGGCAGCTTGGAACCTCCTGTAAATTTTCCCAGATAA 981 0.4169 MKTKTPLKQLKLAVPAQENTHYILPPSDGQELEFDFSLDDLETIKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQASQCPHVVVCYHSFYHNGVISLVLEYMDRGSLADIIRQVKTILEPYLAVVCKQVLQGLVYLHNERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGSTYDYSSDIWSLGMVVLECAIGRFPYIQSEDQQAWPSFYELLAAIVESPPPSAPPDQFSPEFCSFVSSCIQKDPRDRLTSLELLGHPFIKKFEDKDLDLGILVGSLEPPVNFPR 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1059g00004 326 CDD PKc_MAPKK_plant_like 39 305 - -
Sebi1059g00004 326 SUPERFAMILY Protein kinase-like (PK-like) 38 316 IPR011009 -
Sebi1059g00004 326 ProSitePatterns Protein kinases ATP-binding region signature. 47 70 IPR017441 GO:0005524
Sebi1059g00004 326 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 30 305 - -
Sebi1059g00004 326 ProSiteProfiles Protein kinase domain profile. 41 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1059g00004 326 Gene3D Phosphorylase Kinase; domain 1 7 120 - -
Sebi1059g00004 326 Gene3D Transferase(Phosphotransferase) domain 1 122 315 - -
Sebi1059g00004 326 Pfam Protein kinase domain 42 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1059g00004 326 FunFam Mitogen-activated protein kinase kinase 6 122 320 - -
Sebi1059g00004 326 FunFam Mitogen-activated protein kinase kinase 6 9 120 - -
Sebi1059g00004 326 SMART serkin_6 41 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1059g00004 326 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Sebi1059g00004 326 PIRSF ILK 8 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1059g00004 Sebi-Chr1059 46004 49258 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1059g00004 1 326 MAP Kinase Kinase Gene Family AT5G56580 78.028 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Sebi1059g00004 Pkinase 4.1e-67 CL0016