Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1058g00006 ATGGCAGTTATTATATCTTTGGTACTAATATTTGTGGGAATTGTGTTCCTGGTGCTACTTCATGTTTGTTTTTCCGAGTGGTTCTCTAGAAGAGGAGGCAGAGGTTCAATGGCTGAGAGGGGTACTAATGGGGGCAGAAGCATGTCTATCAATGACTTGGAGAAGCTTCCCTGCTATAATTATGTTTCCAAAGACAATACAAACAGCCCTGTGGATTGTGCAGTTTGCTTGGAGAACCTCACTACAGGAGATAAGTGCAGATTGTTGCCTATGTGCAAGCACAGTTTTCATGCCCAATGTGTAGATAAATGGCTTCTAAAGACACCAATATGTCCAATTTGCCGATCCAGTGCTGGTTCTCATAGTGGAAACCAAGTTGTAGGTAACAATGACTACTTTATTGAATCTAGGGAGAGCCAAACTGTCACAGGAAGCCAGCCAGATGACAATAGCTTACAGTTAAGAGAGAGCATAGAAAATGGTCCATCCAGAAATGGTGTAGAATTGAGAGAAAATTCAACATTAGGAAGCCCCAACTCTGGTCACAGAGAAGTGGAATTACGAGAGCACCAGACAGGTGCAATGCAATTGGAGATCAGATGA 603 0.4262 MAVIISLVLIFVGIVFLVLLHVCFSEWFSRRGGRGSMAERGTNGGRSMSINDLEKLPCYNYVSKDNTNSPVDCAVCLENLTTGDKCRLLPMCKHSFHAQCVDKWLLKTPICPICRSSAGSHSGNQVVGNNDYFIESRESQTVTGSQPDDNSLQLRESIENGPSRNGVELRENSTLGSPNSGHREVELREHQTGAMQLEIR 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1058g00006 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 122 IPR013083 -
Sebi1058g00006 200 CDD RING-H2_EL5-like 72 115 - -
Sebi1058g00006 200 Pfam Ring finger domain 72 115 IPR001841 -
Sebi1058g00006 200 MobiDBLite consensus disorder prediction 138 180 - -
Sebi1058g00006 200 ProSiteProfiles Zinc finger RING-type profile. 73 115 IPR001841 -
Sebi1058g00006 200 MobiDBLite consensus disorder prediction 138 181 - -
Sebi1058g00006 200 FunFam RING-H2 finger protein ATL2K 48 121 - -
Sebi1058g00006 200 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 171 - -
Sebi1058g00006 200 SUPERFAMILY RING/U-box 56 125 - -
Sebi1058g00006 200 SMART ring_2 73 114 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1058g00006 Sebi-Chr1058 78162 78764 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1058g00006 45 117 C3H Transcription Factor Family AT1G74410 43.836 8.58e-18 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1058g00006 - K15692 gmx:102667575 240.736