Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1058g00002 ATGAAATTCGCAACTTCCTTGGCTCAGGAGGCAGGATGCAGCCTTAGAATTCATCTTTCACCCTTGTTGAATGATTCAAGTTGTGGAGCAGCATTTGATGCTTACCTCTATGCACTTGGTCATCGGGCAAATCAAACAGGGAAGGTTTTCTTGGATTCTACTGAGCAAAGAAATTGTCTGTCTATAAAGAGTTTTAAAGATAATACTATTTTTGGTTGTGGAATTGAGAACCTAACAAGTGGTGCTGGTGGATGTTCTGACTTCTTGGTTGCTGATGTTAGGAATAAATTAGGAAATGAGCTTAGAAGTTTGGATGAAAACTGTAAACTTAACACTTCAGGTAACAAGTGGGAACAATCATGTCCTTCCTGCCTGAGAACCTGGAAAACCATAGGAGGGATAGATTCCAGAAAGACCAACATCATAGCTGAAAAAACTGAACCTGATCTTTGTAGAATTGCTATACTTGTGACAATGATAAGCAGGAAAATTGAAAATGAGATATATGTCCACACAGTTCTGAGATGCCTGGGAACACAAGATACTTATGCAGCTGAAAATCAAACCACAGAAGGCAATCAGAAGATGAAGAGTGATGGAGATGATACTGCAGGTATGTGGATTCTGATTGGAGCAATAGTAGGGGTTATTCTGTTAATAGTTATCACTGTATACATCATGCTTCGTAGATATTTCAGATCAGCCCCACCAAAAAACAAAGTAACATTTGGAGACATGTTAAAGAAAACTGCTTGTCCAATAGTTTCTATCAAGGAAGTGTATGCTGCCACTAACCATCTGAATGGAATGAATATCATTGGGGAAGGAACTGCAGGTAAGGTCTATAAAGGCACAATGAAAAATAAACAGGAGGTTGCAGTAAAGCACATAATCAATGATGATGGAAATATAGAAACTTTTGTCAGAGAAGTTACAAGTCTATCTCATGTCAGGCACCCAAATCTTGTTACTTTGCTGGGTTGCTGTGTTGAGGGAGATGAATGTTTTATTGTCTATGAGCTATGTCCCAATGGGAGTCTTTCAGAGTGGCTATTTGGCAAGAACAAGGTGTTGTCCTGGACACACAGACTAGAAATTGCAATTGATAGTGCTCGAGGTCTTTGGTTTTTACACTCATATCCTGGAGGCTGCATCGTTCACCGTGATATCAAGCCTACAAATATTCTTCTTGGGTCTAAATTTGAGGCAAAGCTATCAGATTTTGGACTGTCTAAAGTTATTGAGGTGGGTGAAACGTATGTTAGTTCAGAAGTGCGAGGAACTTTTGGATATGTGGATCCTGAGTACCAAAGCAATCGCCGTGTGAATTCATCAGGTGATGTTTACAGCTTTGGCATGGTACTTCTACAAATCCTCTCTGGAAAGAAGGTCATAAATTTGAAACTGAAGAAACCAATGTCACTGAGTAAAATGGCAAAAGCACTCACCAGGGATGGCAGCATTACAGAATTTGCTGATCCTAAACTTCAAGGAGATTACTCTGAGGAAGCATTTGATTTTACACTTAAGCTGGCTCTGTCATGCACATCACTCAACCAACATCATCCGTCCATGGAGCAGGTTCTTAAAAAACTGGAAGAGGCCTTATTAATTTCAAAAGGGTGGAAGGTTTCTACTACAGAAACTCCAGAAGACAATGTTTGA 1665 0.397 MKFATSLAQEAGCSLRIHLSPLLNDSSCGAAFDAYLYALGHRANQTGKVFLDSTEQRNCLSIKSFKDNTIFGCGIENLTSGAGGCSDFLVADVRNKLGNELRSLDENCKLNTSGNKWEQSCPSCLRTWKTIGGIDSRKTNIIAEKTEPDLCRIAILVTMISRKIENEIYVHTVLRCLGTQDTYAAENQTTEGNQKMKSDGDDTAGMWILIGAIVGVILLIVITVYIMLRRYFRSAPPKNKVTFGDMLKKTACPIVSIKEVYAATNHLNGMNIIGEGTAGKVYKGTMKNKQEVAVKHIINDDGNIETFVREVTSLSHVRHPNLVTLLGCCVEGDECFIVYELCPNGSLSEWLFGKNKVLSWTHRLEIAIDSARGLWFLHSYPGGCIVHRDIKPTNILLGSKFEAKLSDFGLSKVIEVGETYVSSEVRGTFGYVDPEYQSNRRVNSSGDVYSFGMVLLQILSGKKVINLKLKKPMSLSKMAKALTRDGSITEFADPKLQGDYSEEAFDFTLKLALSCTSLNQHHPSMEQVLKKLEEALLISKGWKVSTTETPEDNV 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1058g00002 554 SMART serkin_6 267 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1058g00002 554 Pfam Protein kinase domain 271 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1058g00002 554 Pfam SPARK 19 140 IPR043891 -
Sebi1058g00002 554 ProSitePatterns Serine/Threonine protein kinases active-site signature. 385 397 IPR008271 GO:0004672|GO:0006468
Sebi1058g00002 554 FunFam probable receptor-like protein kinase At5g59700 342 550 - -
Sebi1058g00002 554 Gene3D Phosphorylase Kinase; domain 1 233 341 - -
Sebi1058g00002 554 SUPERFAMILY Protein kinase-like (PK-like) 249 532 IPR011009 -
Sebi1058g00002 554 Gene3D Transferase(Phosphotransferase) domain 1 342 544 - -
Sebi1058g00002 554 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 95 534 - -
Sebi1058g00002 554 ProSiteProfiles Protein kinase domain profile. 267 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1058g00002 Sebi-Chr1058 62998 65586 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1058g00002 202 533 Receptor kinase-like Gene Family AT1G07650 37.901 2.29e-58 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Sebi1058g00002 Pkinase 2.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1058g00002 - - aprc:113867593 831.632