Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1056g00011 ATGGCTGCATTGAGGAGATGGCACTGGACTGGAAGATTGCAGAAAGATGTGGTCCTTGATCAAGCATCTATAACAATTAATCCTTGGGAGACCGAGACTGTTGTCTGTGACATGAAGGGTGGGATTCTTGTTACAGATGATGCTGGTGGGGATTCCTATTCTAGGCGTAGCAAGGAATTGACTGAAGGATATAGAGATTATGCACAAGCCAATCCTCATAGGAAAAATAAAAAAGGTGACGGGAAAGGCGTATGTTACGATTGCTTGAGTGGCGGAATACTCTTGCGCTGCTGTGGAAAAGGATGTCAAAGGAGGTACCATCCCTCCTGTGTGGATCCTCCTCTTAATTATATTCCTCCTGGGTTTTGGCATTGTATTTGGTGTGTTAAGAAAAAGATAGAGTTTGGTTTGCATTCTGTTTCTGAAGGGGTGGAATCCATCTTGGATTCCAGAGAAGTGATTTCAGAAACTGAAGTGATGCAAAGAGAGTACTTTGTCAAGTATCAGGGCCTTGCTCATGCTCACAACTGCTGGATTCCAGAAAGACAAATACTTCTTGAGGCCCCAAAGCTTTTGGCAAAGTTTAAGAAGAAACTGCAGGTTGTAAGGTGGAAAAGAGATTGGACTATACCTCACCGCTTGCTTCTAAAAAGGGCAATTATATTACCAAAGCAACATGATCAACATTTTGGTGGGCATGAAGACAGTGGTTTCATTTACCGTTATGAGTGGCTTGTAAAATGGAATGGCCTTGGTTATGATCATGTTACATGGGAGTTAGATGATGCTTCATTTATGACGTCATCTGAAGGCATGAAACTCATAGACGATTATGAAAGTCGTTGGAAGAGAGCAGTTAGACTGTCAAATTCTTTTGAAGCCAATGAGAGGAGAAAGGCTTCATTTGCTGAATTATCAGTGCTACCATTTGGAGATTCACCAGGATTTTATAACCAGCATTTATGTTATGTGAACAAGCTTTGCATGTGTTGGCACAAAAGTCAGAGTGCTCTTATTGTAGATGATCAAATTGACCAGGAGCGGGTTATGAAGGTGATTTTGTTTATATTATCTTTGAATTGTAATGTGAAGAAGCCTTTTCTCATCATCTCAACTTCCACTGGCCTCTCTGTTTGGGAAACAGAATTCTCACATTTGGCACCATCTGCCAATCTTGTAGTTTACAAGGGAAACAAAGATGTACGCTCTGGCATCAGGGCATTAGAGTTTTCTAATGAACATGGTGGCGTCTTATTTCAAATATTATTGTCATCTTCTGATATTGTTGTTGAGGACATACATGCACTAAGATGCATTCCATGGGAAGCGATTATAATTGATGAATGCCAGCGATCTAGAATTTTAGGACACTTTGAAAATTTTAAGACTCTAGCAGCTGAGATGAGGCTCCTTATCGTCAGTGGACAAATCAAGGAAGATCGAGCTGATTATATCAAATTGCTTTCATTCCTTAAGTCAGGACATCATGAGTTAAATATGTGTCAAATGGAGACTTTCTTCAGTGCTAGCATTTCCAATTTGAAGAGCCAATTAGAACAATATGTTGCATTTAAATGCAATTCAAGCTCCACTAGGTTTGTAGAGTATTGGGTTCCTGCCCAGCTTTCCAGTTTGCAGCTTGAGCAGTATTGTTCAATGCTGCTTTCAAACTCAATGCTGTTATGCTCAGGCCAAAAGTTTGACTCAGTTGATGCCCTCCGTGAACTTATTACCTCAACAAGGAAGTGCTGTGACCACCCTTATCTCCTAGATCAGTCACTGCATAATTTTATCACTGGAGGTCTACCTGTTGAAGAGCATTTAAATATTGGAATAAAAGCAAGTGGAAAACTGCTACTTCTTGAAAAAATCCTTTTTGAAGTAAGAAGATGTGGGTTAAGAGTGATAATATTATTTCAGTCAAGTGGTGGTTCTGGATCAATTGGAAATATTTTGGATGATGTTCTCTGTCAGAGATTTGGTAAAGATTGCTATGTACGATATGGTAGAGGTTATATCCCATCAAAGAAGCAAGCTGCATTGGACACATTTAATGACAAAGAAGGTGGAAAATTTGTCTTTTTGTTGGAAAACCGAGCTTGTGTCCCTAGCATTAAGCTTTCATCAGTGGATATTATTATATTATTCGACAGTGATTGGGACCCACAAAATGACCTAAGATGCTTACAAAAGATGTCTATCAGCTCACAGTTCAAACAGTTAACAGTTTTAAGATTGTACTCATACTTCACAGTTGAAGAAAAGGTTTTAATGCTTGCAAAAGAGGGTATAACTCTTGACGGCAATATGCAGTCAATTAACCTGAATACATGTCACACCCTGTTAAAATGGGGTGCCTCCTATCTGTTCAATAAGCTTGATGACTTACATGGCAGTGGCACCTCAGTTTCTGCTCGAGATATCTCTTCTGATCAGTCACTTCTAAGTGATGTAATCTGTGAATTATCATCCAAATTGGTTTGTTGTGCTGGTGATACTGATTGTCATGGATCTTCATTTATATCTAGAGCAAAGCAGAATGGAGGGGAATATGCAAGGAACATTTTATTACTAGGAGAAAGAGAAATGAAGGATTTGGGCAATGAGCCTTATGCTTTTTCCTGGAGCGATCTCCTCAAAGAAAGGTATCCTCAATGGAAGTTTTTATCTGTTTCATCTCAGAGGATCAGGAAAACAGTCAAACATTTTGATCACATACTAAAAGAATCTGAATGTGAAATTGATGCCATTTTAAGAGAGAGGATGTCCAAGGATAATGCGGATCCCAAGAGGAGAAAAGTGTCCAAGGATAATGTTGATCCCAAGGGGAGGAAAGTGACCGAGGATAATGTTGATCCCAACAGGAGAGAAGTGTCCAAGAATAATGTTGATCCCGAGGGGAGGAAAGTGTCCAAGAATAATTTTGATCCCAAGGGGAGGAGAGTGAACAAGGATGATGGTGACACCACAAGGAGGAAAGTTTCCAAGGATATTGTTCATAGGAAGGGAATGAAATTGTTAAAGGATGTAGTTGATCCTAAGATTAGGAAGGTGACCAAGGATATTATTGATGCGAAGAGGAGGGAAGTGTCCACCGATATTGTTAATTCCAAGAGCAAGAAAGTGTTCAAGGATATCGTTGATTCCAAATATCGAAAAACAAGGACGAAGAACAAGAAGAATCTATGTGCTAGCTATAGGGCAAGCAAATTGAATGGTAGTAGGATTGGTTTTTCTAAGGCGGCACTTGATTCCATAGTGCATCCTTTAACCAATGAAATCACAGGAGCTGCTGTAATAGACATACAATTTTTAGAACAAAAGAAACTGCCTGACATGCCAAAGCCCGATATATCAGGTCTCTGTGATGTTCTACATTTTTCGAAAAACATCAAGGCTGTTGCCATGAAGATTCTTGAGCATATATTCAAACATTACAATGTTAATTGCCTAGAAGTTTCTACCATGCAGGCATTTGAAATATCTGTGTGTTGGCTAGCAGCTTCTTTGTTGAAGCATGAGATTGATAGGAAAGATTCACTTGATCTTGCAAAACTGTACTTGAATTTTTATTGCAATGAGGAAGAAGTCACTGATGTTTTCTCTGAACTGTGGAAGCATAAGAAAGATTTTTCAAGTTGTTTACAAAATGGACTTTATGCTGAGAAATGTAACATAAATGGTGCTTCAGACTCCATGACACCTGAGCTGAAAGATTTGGCAGAGGAGGAGAAGCAGAAGGGTTTTCAGGGTTCTCATGATTTAAATCTCATGAAATCTGCAACAAATGAACAAGATCTTCGAAGAAAGTCTCCCACCACAACGGTGCTATCTTCACAAGACCAGACTTGTAGAGAAACATTTCATAGTGGACCTTACACAGCTCATGAAATTTGTCCATCTCAGAAGACACCTGATAGTTTGGCTGTGGAAGCTGATGCTATCTCCATGGAATCTGATGCAGATGAGGGATTAGATGCTCTGACCTCAGTAAAAGAAGTTTCATTCCATGAACACTGGAATGAAGTCCCTAATTCATGTAATGATCCTAATAATGTCAACCATGTCACAGGTTCTTTGGAAAGACAGAGTCCTGTTATAGGTACAGAGATTGCACAGTCTGATGGCAAAGTTTATGAAGATCCTCAAATTTTAATGAATGAAGTGATTGCTATTGATAATTCTCTAAGTATGTCAACTCATCCTGTGCATCATAATAGTGATGAGACAGATGCTGTAACTTGCGATAGTACTGCTGTTCCTGAGGTCAGACAGTGGTACAATATAGTGAGCCCTGTATTTGGTGAGTCGACTACTTTGGAGTTTGCTGAGACTACCTTACCACCATGTATGCAACCATCAGATGAAAATTTGTTGCCATTGCCTCAG 4389 0.3946 MAALRRWHWTGRLQKDVVLDQASITINPWETETVVCDMKGGILVTDDAGGDSYSRRSKELTEGYRDYAQANPHRKNKKGDGKGVCYDCLSGGILLRCCGKGCQRRYHPSCVDPPLNYIPPGFWHCIWCVKKKIEFGLHSVSEGVESILDSREVISETEVMQREYFVKYQGLAHAHNCWIPERQILLEAPKLLAKFKKKLQVVRWKRDWTIPHRLLLKRAIILPKQHDQHFGGHEDSGFIYRYEWLVKWNGLGYDHVTWELDDASFMTSSEGMKLIDDYESRWKRAVRLSNSFEANERRKASFAELSVLPFGDSPGFYNQHLCYVNKLCMCWHKSQSALIVDDQIDQERVMKVILFILSLNCNVKKPFLIISTSTGLSVWETEFSHLAPSANLVVYKGNKDVRSGIRALEFSNEHGGVLFQILLSSSDIVVEDIHALRCIPWEAIIIDECQRSRILGHFENFKTLAAEMRLLIVSGQIKEDRADYIKLLSFLKSGHHELNMCQMETFFSASISNLKSQLEQYVAFKCNSSSTRFVEYWVPAQLSSLQLEQYCSMLLSNSMLLCSGQKFDSVDALRELITSTRKCCDHPYLLDQSLHNFITGGLPVEEHLNIGIKASGKLLLLEKILFEVRRCGLRVIILFQSSGGSGSIGNILDDVLCQRFGKDCYVRYGRGYIPSKKQAALDTFNDKEGGKFVFLLENRACVPSIKLSSVDIIILFDSDWDPQNDLRCLQKMSISSQFKQLTVLRLYSYFTVEEKVLMLAKEGITLDGNMQSINLNTCHTLLKWGASYLFNKLDDLHGSGTSVSARDISSDQSLLSDVICELSSKLVCCAGDTDCHGSSFISRAKQNGGEYARNILLLGEREMKDLGNEPYAFSWSDLLKERYPQWKFLSVSSQRIRKTVKHFDHILKESECEIDAILRERMSKDNADPKRRKVSKDNVDPKGRKVTEDNVDPNRREVSKNNVDPEGRKVSKNNFDPKGRRVNKDDGDTTRRKVSKDIVHRKGMKLLKDVVDPKIRKVTKDIIDAKRREVSTDIVNSKSKKVFKDIVDSKYRKTRTKNKKNLCASYRASKLNGSRIGFSKAALDSIVHPLTNEITGAAVIDIQFLEQKKLPDMPKPDISGLCDVLHFSKNIKAVAMKILEHIFKHYNVNCLEVSTMQAFEISVCWLAASLLKHEIDRKDSLDLAKLYLNFYCNEEEVTDVFSELWKHKKDFSSCLQNGLYAEKCNINGASDSMTPELKDLAEEEKQKGFQGSHDLNLMKSATNEQDLRRKSPTTTVLSSQDQTCRETFHSGPYTAHEICPSQKTPDSLAVEADAISMESDADEGLDALTSVKEVSFHEHWNEVPNSCNDPNNVNHVTGSLERQSPVIGTEIAQSDGKVYEDPQILMNEVIAIDNSLSMSTHPVHHNSDETDAVTCDSTAVPEVRQWYNIVSPVFGESTTLEFAETTLPPCMQPSDENLLPLPQ 1463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1056g00011 1463 Gene3D - 202 281 - -
Sebi1056g00011 1463 SUPERFAMILY Chromo domain-like 235 281 IPR016197 -
Sebi1056g00011 1463 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 534 790 IPR027417 -
Sebi1056g00011 1463 Pfam SNF2-related domain 332 589 IPR000330 GO:0005524|GO:0140658
Sebi1056g00011 1463 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 111 1249 - -
Sebi1056g00011 1463 SMART chromo_7 207 283 IPR000953 -
Sebi1056g00011 1463 SMART chromo_7 141 200 IPR000953 -
Sebi1056g00011 1463 SUPERFAMILY Chromo domain-like 101 201 IPR016197 -
Sebi1056g00011 1463 ProSiteProfiles Zinc finger PHD-type profile. 82 131 IPR019787 -
Sebi1056g00011 1463 Gene3D - 532 767 IPR027417 -
Sebi1056g00011 1463 ProSiteProfiles Chromo and chromo shadow domain profile. 142 207 IPR000953 -
Sebi1056g00011 1463 Pfam Chromo (CHRromatin Organisation MOdifier) domain 144 198 IPR023780 -
Sebi1056g00011 1463 MobiDBLite consensus disorder prediction 923 996 - -
Sebi1056g00011 1463 ProSitePatterns Zinc finger PHD-type signature. 85 128 IPR019786 -
Sebi1056g00011 1463 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 496 IPR027417 -
Sebi1056g00011 1463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 136 IPR013083 -
Sebi1056g00011 1463 Gene3D - 143 201 - -
Sebi1056g00011 1463 Gene3D - 320 531 IPR038718 -
Sebi1056g00011 1463 SMART PHD_3 84 129 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1056g00011 Sebi-Chr1056 138826 164474 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi1056g00011 SNF2_N 1.8e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1056g00011 - K11643 gmx:100813574 1200.65