Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1056g00003 ATGGACCATCACTTTTTCACGCGCCTCAAAAGGAGAGTGAAGCTAACAACCACACGATTACCCTTCCCTATGGGTGTGCCGCAAAGGAATTTTGAACTAAAATTATGGAGCTTGGAGGAGGAGATATTGTTGGAGAGGTTATCGCTTACTATCTATCCTCTTTCACAATATGTTTATTACTGGACTCTCAAAAAAAAAAAAAGGAAGAGAGAAGAAAGAAGCTTCTCAAGTCAGATTTGGTCTGTCAGCAAAATTGGGACCCCTGGAATTGTGGGCTTGGACCTGAGATTCCGCTGCAATCACTTTGTTGGGGATTTCTATGATTTCACGGATTCTTGTGTTATCAGCTTTGTTGTGATCATATGCTTTTTCAGATACTGTGCAGAAACAATTTTCCCTCGTTTAAACTATTCTGATGACCCTCCAGTTCAAAACATCTTTGCTAAAGATGTTCATGGTGAGATATGGAAATTCAGGCACATTTATAGGGGCACTCCAAGGCGGCATCTTTTAACCACTGGGTGGAGTAGTTTTGTCAATAACAAGAAGCTTGTTGCAGGGGATTCAATTGTGTTTCTGAGAGCAGAAAATGGGGATCTTTGTGTTGGAATTAGAAGGGCTAAAAGGGGAATTGGTGGTGGACCTGACCCTTCATCAGGGTGGAATCCAGCAGGTGGAATTCATTCTGTACCTTATGGAGGATTTTCAGGCTTTTTGGGAGAGGAAGATAACCAACACCTGAGAAATGGTCATGGGAATGGTTTGAGCACAAGTACAACACTGATGGGTAGAGGGAAGGTTGCTGATCCAAGATGGCCTGACTCTCCTTGGAGACTTCTCCAGGTAAATGGGATGAACCAGAGTTACTTCACAAATGTGAAAAGGGTGAGCCCATGGCTGGTTGAAATTGTATCAAACATGCCTACCATTCATCTTTCCCCATTCACACCACCACGCAAGAATTGA 966 0.4296 MDHHFFTRLKRRVKLTTTRLPFPMGVPQRNFELKLWSLEEEILLERLSLTIYPLSQYVYYWTLKKKKRKREERSFSSQIWSVSKIGTPGIVGLDLRFRCNHFVGDFYDFTDSCVISFVVIICFFRYCAETIFPRLNYSDDPPVQNIFAKDVHGEIWKFRHIYRGTPRRHLLTTGWSSFVNNKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGGGPDPSSGWNPAGGIHSVPYGGFSGFLGEEDNQHLRNGHGNGLSTSTTLMGRGKVADPRWPDSPWRLLQVNGMNQSYFTNVKRVSPWLVEIVSNMPTIHLSPFTPPRKN 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1056g00003 321 Gene3D - 118 208 IPR015300 -
Sebi1056g00003 321 Pfam B3 DNA binding domain 141 207 IPR003340 GO:0003677
Sebi1056g00003 321 Gene3D - 239 309 - -
Sebi1056g00003 321 CDD B3_DNA 136 206 IPR003340 GO:0003677
Sebi1056g00003 321 SMART B3_2 117 208 IPR003340 GO:0003677
Sebi1056g00003 321 ProSiteProfiles B3 DNA-binding domain profile. 146 208 IPR003340 GO:0003677
Sebi1056g00003 321 FunFam Auxin response factor 112 208 - -
Sebi1056g00003 321 MobiDBLite consensus disorder prediction 249 263 - -
Sebi1056g00003 321 MobiDBLite consensus disorder prediction 246 268 - -
Sebi1056g00003 321 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 259 317 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sebi1056g00003 321 SUPERFAMILY DNA-binding pseudobarrel domain 126 208 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1056g00003 Sebi-Chr1056 26081 29509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1056g00003 267 320 B3 DNA Binding Superfamily AT4G30080 61.818 1.58e-13 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi1056g00003 B3 2.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1056g00003 - - mnt:21407127 242.662