Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1055g00007 ATGGCTCGTGCTACTACTACTACCAACTCTAACTGGCTATCGTTTTCGCTCTCGCCAATGGAAATGCCTCAGTTCGTTCAATACGACGCCGCTTCCTCCGCTACTTCCTCCCATCATTACTTCCTTGACAATTTGTACGCCAATGGTAGTGCAGTGCAGCGGTGGGGAAACCCCAAGTCTCAGTTACTATACGGCGATAGCCAGACGGAGACTCAGGATTCTTCCCTCACTCACATATATGACCATCACCATGGCTCTGCTTACTTCGGTGGTGACCACCAAGATCTCAAGGCTATTGCTGCCTTCCAAGCTTTCTCTACCAACTCTGGCTCAGAGGTTGATGACTCTGCTTCCATCGGAAAAACGCAACCAGGTTGCACCAACGAGTTCGGGACTCACTCTATTGAGTCTTCTGCCAACGAGTTAGCCTTCTCTGCAACCGCCGCCGCCGCGACCGGGACTTTGTCCCTTGCCGTCGCGCAGAGCTCCGAGGAGACTCTCGTTGCGGCTGATTCCGACAGCTCGAAGAAGATAGCCGATACCTTCGGCCAGAGAACTTCAATTTACAGAGGTGTAACCAGACACCGATGGACGGGTAGATATGAAGCGCATCTATGGGATAACAGCTGTAGAAGGGAGGGTCAGGCTAGGAAAGGGCGTCAAGTTTATCTGGGTGGATATGACAAGGAAGAAAAGGCCGCGAGGGCCTATGATTTGGCAGCTCTAAAGTACTGGGGTCCCACCGCTACCACCAACTTCCCTGTTTCCAACTATACAAAGGAATTGGAAGAGATGAAGCATGTAACAAAGCAAGAATTTATTGCATCACTGAGAAGGAAAAGTAGTGGTTTTTCCAGAGGAGCTTCCATCTATAGGGGTGTTACAAGGCATCACCAACAAGGTAGATGGCAAGCAAGAATTGGCCGTGTTGCTGGAAACAAAGATCTGTATTTGGGAACATTCG 964 0.501 MARATTTTNSNWLSFSLSPMEMPQFVQYDAASSATSSHHYFLDNLYANGSAVQRWGNPKSQLLYGDSQTETQDSSLTHIYDHHHGSAYFGGDHQDLKAIAAFQAFSTNSGSEVDDSASIGKTQPGCTNEFGTHSIESSANELAFSATAAAATGTLSLAVAQSSEETLVAADSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYTKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTF 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1055g00007 321 ProSiteProfiles AP2/ERF domain profile. 188 254 IPR001471 GO:0003700|GO:0006355
Sebi1055g00007 321 SMART rav1_2 188 260 IPR001471 GO:0003700|GO:0006355
Sebi1055g00007 321 CDD AP2 187 256 IPR001471 GO:0003700|GO:0006355
Sebi1055g00007 321 PRINTS Ethylene responsive element binding protein signature 236 256 IPR001471 GO:0003700|GO:0006355
Sebi1055g00007 321 PRINTS Ethylene responsive element binding protein signature 189 200 IPR001471 GO:0003700|GO:0006355
Sebi1055g00007 321 SUPERFAMILY DNA-binding domain 289 321 IPR016177 GO:0003677
Sebi1055g00007 321 ProSiteProfiles AP2/ERF domain profile. 290 321 IPR001471 GO:0003700|GO:0006355
Sebi1055g00007 321 Pfam AP2 domain 188 246 IPR001471 GO:0003700|GO:0006355
Sebi1055g00007 321 Gene3D AP2/ERF domain 290 321 IPR036955 GO:0003700|GO:0006355
Sebi1055g00007 321 Gene3D AP2/ERF domain 188 256 IPR036955 GO:0003700|GO:0006355
Sebi1055g00007 321 SUPERFAMILY DNA-binding domain 187 256 IPR016177 GO:0003677
Sebi1055g00007 321 FunFam AP2-like ethylene-responsive transcription factor ANT 187 256 - -
Sebi1055g00007 321 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 146 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1055g00007 Sebi-Chr1055 171448 175060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1055g00007 29 321 AP2-EREBP Transcription Factor Family AT5G10510 60.778 6.59e-129 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi1055g00007 AP2 4.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1055g00007 K09285 - gmx:100775390 493.426