Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1052g00003 ATGTTAAACACATTGTTCACAATCAAGCAACATCCGAAGAAAGGAGAGGGGAAAGTGGGTGAAGAATCAGAATCCAATCTAAACATGAGGAAGGAAATGGTGGAGCAAGACCCCATAATGGAAAATCAAAATATTGAGAATGGGGTGTTAATGGGTGAAGAGGAAGAGCCTAAACAAAACCAGGACAAGCAGAAGGTGATCATATTGGGAGAATCTAATGCAAGTGAGGATTCAAAGAATTCCAAAATAGATTCTAAAGAGGGTGGAGAAGACTCAACAAATTATCCCAAAGAAAGCTCTCCATTGCTTCTTTTTGGATTCATTATTGATCCTACTAAAGGAAATCAAAAGGCTGCTTACTCTTGTGGTTTTTGTAACAAAAGCTTTGTTACTCCACAAGCATTAGGTGGCCACCAAAATGGCCACAAATGGGAGAGAAATCTCAAACAAGGAATCCAGGCTATAAATATAGCCAGGGGAAGGAGCTCATGCTATGATTTTTCATCACCAACCCTGCCTAGCTATGAACCTTTTAGTGGAGGCCTAAACCCCATGACCCAACAACACCTTGAGAAGTATCATCCCCAAACATCCTATGCTATGATAGAGTGTGGCTATCAATCTTATGGACTAGACAAAATGATTCAACATACAGGGGTTGCAAACACTAGTTTTGGCACAGGGTATGGTATGCTAGACATTGGAAATAGTAGTGCATTTCAGCATCCTGAGATGGTACGATTCAATCATGGGTTTGAGACTAGCAATTATGATAGAATGGAAAATGTTTATTATGGGATGCATTCACAGACTGATCATGAAGTCAAAGAGACTGGAAAAACAGGATTTGACTTTGTTTTGCTACCAATGGGAAATGATCAGATCATAGGGAATCAACGGGTTACGAGCTCAGAGATTGACTTTGGTTTGCTTCCAAAGAGAGATGGTGAAGACACAGAGATTCAGCATGATTAA 975 0.4 MLNTLFTIKQHPKKGEGKVGEESESNLNMRKEMVEQDPIMENQNIENGVLMGEEEEPKQNQDKQKVIILGESNASEDSKNSKIDSKEGGEDSTNYPKESSPLLLFGFIIDPTKGNQKAAYSCGFCNKSFVTPQALGGHQNGHKWERNLKQGIQAINIARGRSSCYDFSSPTLPSYEPFSGGLNPMTQQHLEKYHPQTSYAMIECGYQSYGLDKMIQHTGVANTSFGTGYGMLDIGNSSAFQHPEMVRFNHGFETSNYDRMENVYYGMHSQTDHEVKETGKTGFDFVLLPMGNDQIIGNQRVTSSEIDFGLLPKRDGEDTEIQHD 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1052g00003 324 MobiDBLite consensus disorder prediction 77 93 - -
Sebi1052g00003 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 147 IPR013087 -
Sebi1052g00003 324 ProSitePatterns Zinc finger C2H2 type domain signature. 122 142 IPR013087 -
Sebi1052g00003 324 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 43 274 IPR044246 GO:0009788
Sebi1052g00003 324 MobiDBLite consensus disorder prediction 11 27 - -
Sebi1052g00003 324 MobiDBLite consensus disorder prediction 1 27 - -
Sebi1052g00003 324 Gene3D Classic Zinc Finger 99 161 - -
Sebi1052g00003 324 MobiDBLite consensus disorder prediction 69 97 - -
Sebi1052g00003 324 SUPERFAMILY beta-beta-alpha zinc fingers 117 148 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1052g00003 Sebi-Chr1052 138688 139662 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1052g00003 90 165 C2H2 Transcription Factor Family AT5G01860 42.500 4.32e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi1052g00003 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1052g00003 - - lang:109329350 139.043