Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi104g00020 ATGGAACCTAAGTGGGGCGGCGTTCTGGCGGCGTCGTCAATTTTCTCCGCCTTCGACGACCTGAAGTGGATCGCGTCGGAGTTTGATCAAGAACTTTTCACGAAGCGGCCGGTGTCCGGAGAACTCGAAACGGCCAACGGATCAGCCAACGACGACGACAACGACGTGAAACCGTGCAAGATGGATCCATTCACCGGCGGCGGCGTTTTCTCCGGTCAAATCAACGGCGCCGCCACCGCCGCTTCTTTCCAAAATCTGGATGCGGTAACTGCATTTTCAACATGTGGTGGACTAACGGATAATACACTTATCTCCCCAAACCTCACTTCCAAGCATTCAACCATCTCTGCATTTGATTCTCAATCATCCATTTGTGGTACTGTAACCAGCCCGGTGTCTGCTAATAAACCAAACAGCAGAGATGATCAAACCAAAGGAGTCGTTACAAGCGGTTCCTCACGTGATCCATCTGATGAGGATGATGAAGCAGGTCCTTGTGAACAAAGCACTAACCCTATTGACGTGAAGCGCCTTAGAAGGAAGGTTTCTAATCGCGAGTCTGCCAGGAGGTCCAGAAGAAGAAAACAAGCACATTTGGCTGACCTGGAGGTGCAGGTTGAACAGCTGAGGCTGGAAAATGCAACCCTATTTAAGCAGCTTACAGATGCCAGCCAACAATTTCGTGAGGCTGACACGAATAACCGAGTCCTAAAATCAGATGTAGAAGCTCTGAGAGCTAAGGTGAAGTTAGCAGAGGATATGGTCACTCGGGGCTCTTTCACCACAATTAACAACCAGATTTTCCAAAACCAGAGTCAATTGACAACCACACCACAACTCAACACGAGTAATATGCGCCGCATGGCACATGTCTCGCCCACAATCACCGTCCATGGGAATGATGCAGCTTCATATGGTGGTGGTGGACAGAATTCAGCTCTTGGGCTTGGAGACTTTGATATAACTTGCAGTGATTTTAACAATGGAGTCAATAGCGATGCTTCATCGCATTATCGCATAAGCGTTGGCATCCCCGTCCTCGCTGCCATTAGTAGTCTCGTCGTTAAGCTTGCTAACAAGGCTCAGGGCAAGCCACCGGATTGGCAAGATTTCACTGGTATTGTTGTGTTGCTTATTATCAACTCAACCATCAGTTTCATTGAGGAAAACAATGCAGGCAATGCTGCAGCTGCTTTGATGGCTGGTCTTGCACCCAAAACCAAGGTTCTGAGGGATGGAAAATGGAGTGAGCAAGAGGCATCAATTTTGGTACCAGGAGATGTGATTAGCATCAAGTTGGGAGACATTGTCCCTGTTGATGCCCGTCTCTTGGAGGGTGATCCTCTCAAGATTGACCAATCTGCCCTCACTGGTGAGTCCTTGCCAGTCACAAGGCACCCTGGTAGTGAGGTCTTCTCTGGTTCCACTTGCAAACAAGCTGCACACCTTGTAGACAGCACCAACAATGTTGGTCACTTCCAAAAGGTGTTGACATCCATTGGTAACTTCTGTATCTGCTCAATTGCTTTGGGCATGTTGGTTGAGATCATTGTCATGTACCCTATCCAGAACAGGGCTTACAGAGATGGTATTGACAATTTGTTGGTGCTTCTCATTGGAGGTATTCCAATTCCCATGCCAATTGTCTTGTCTGTGACCATGGCTATTGGATCTCACCGCCTGTCTGAGCAAGGAGCCATCACTAAGAGGATGACAACCATTGAAGAAATGGAAGGAATGGATGTTCTTTGCAGTGACAAAACTGGAACTCTCACCCTTAATAAGCTTATATTCTCACCCTTTTACTTGTACTATTATTAG 1821 0.4761 MEPKWGGVLAASSIFSAFDDLKWIASEFDQELFTKRPVSGELETANGSANDDDNDVKPCKMDPFTGGGVFSGQINGAATAASFQNLDAVTAFSTCGGLTDNTLISPNLTSKHSTISAFDSQSSICGTVTSPVSANKPNSRDDQTKGVVTSGSSRDPSDEDDEAGPCEQSTNPIDVKRLRRKVSNRESARRSRRRKQAHLADLEVQVEQLRLENATLFKQLTDASQQFREADTNNRVLKSDVEALRAKVKLAEDMVTRGSFTTINNQIFQNQSQLTTTPQLNTSNMRRMAHVSPTITVHGNDAASYGGGGQNSALGLGDFDITCSDFNNGVNSDASSHYRISVGIPVLAAISSLVVKLANKAQGKPPDWQDFTGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEASILVPGDVISIKLGDIVPVDARLLEGDPLKIDQSALTGESLPVTRHPGSEVFSGSTCKQAAHLVDSTNNVGHFQKVLTSIGNFCICSIALGMLVEIIVMYPIQNRAYRDGIDNLLVLLIGGIPIPMPIVLSVTMAIGSHRLSEQGAITKRMTTIEEMEGMDVLCSDKTGTLTLNKLIFSPFYLYYY 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi104g00020 606 MobiDBLite consensus disorder prediction 129 172 - -
Sebi104g00020 606 SUPERFAMILY Calcium ATPase, transduction domain A 405 480 IPR008250 -
Sebi104g00020 606 PANTHER CALCIUM-TRANSPORTING ATPASE 346 598 - -
Sebi104g00020 606 Coils Coil 234 254 - -
Sebi104g00020 606 Gene3D - 175 231 - -
Sebi104g00020 606 NCBIfam HAD-IC family P-type ATPase 374 603 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi104g00020 606 SMART brlzneu 172 236 IPR004827 GO:0003700|GO:0006355
Sebi104g00020 606 SUPERFAMILY Leucine zipper domain 176 226 IPR046347 GO:0003700|GO:0006355
Sebi104g00020 606 Coils Coil 185 226 - -
Sebi104g00020 606 Pfam E1-E2 ATPase 476 563 - -
Sebi104g00020 606 Pfam E1-E2 ATPase 404 479 - -
Sebi104g00020 606 FunFam BZIP transcription factor 174 225 - -
Sebi104g00020 606 FunFam Plasma membrane ATPase 405 484 - -
Sebi104g00020 606 CDD bZIP_plant_GBF1 177 228 IPR045314 GO:0003700|GO:0006355
Sebi104g00020 606 Gene3D - 581 595 IPR023214 -
Sebi104g00020 606 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 174 237 IPR004827 GO:0003700|GO:0006355
Sebi104g00020 606 SUPERFAMILY Calcium ATPase, transmembrane domain M 347 577 IPR023298 -
Sebi104g00020 606 Gene3D - 367 580 - -
Sebi104g00020 606 MobiDBLite consensus disorder prediction 129 153 - -
Sebi104g00020 606 PRINTS P-type cation-transporting ATPase superfamily signature 584 598 - -
Sebi104g00020 606 PRINTS P-type cation-transporting ATPase superfamily signature 452 466 - -
Sebi104g00020 606 Pfam bZIP transcription factor 175 223 IPR004827 GO:0003700|GO:0006355
Sebi104g00020 606 ProSitePatterns E1-E2 ATPases phosphorylation site. 586 592 IPR018303 -
Sebi104g00020 606 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 179 194 IPR004827 GO:0003700|GO:0006355
Sebi104g00020 606 Gene3D - 405 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi104g00020 Sebi-Chr104 711044 717306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi104g00020 348 596 Primary Pumps ATPases AT3G42640 82.397 1.42e-131 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Sebi104g00020 E1-E2_ATPase 4.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi104g00020 K01535 - csav:115724825 404.445