Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1047g00006 ATGTGGGAGAAAACTCCAGGCCTTCTGAATAACACAATCCATCTCTATCAAGATGACCTAATTTCGTGGAACGAAGATGGCACAAGCTTCATAGTTTGGCGACCCGCTGAATTCGCTCGAGATTTGCTTCCCAAGTACTTCAAGCACAACAACTTCTCTAGTTTCGTCCGTCAGCTTAACACCTATGGATTTCGGAAGGTTGTCCCTGACCGTTGGGAATTCGCTAACGATTGTTTCCGGCGAGGCGAGAGAGGCCTGCTTCGCGATATACAGCGCCGGAAAATATCGACGTCGGCGACGGCAGCAGGAGCGGGAGCAGGAGCCACGACGGCCAATACGGTAACGGTGGCGGTGGCGGCACAACCAGGCATAGCGCTGTCTCCAACAACTTCCGGCGATGAACAGGTACTATCCTCGAACTCATCTCCGATTGGTAATACAGTGCACCGCACCACAAGTTGCACCACTGCGCCCGAGCTCTTAGAAGAGAATGAAAGGCTTAGGAAAGAGAACATGCAACTGAGTCACGAGTTGAGTCAATTGAAGGGTCTGTGTAATAACATAGTCGCCTTGATGTCCAATTATGCTTCTGGTTTTAGCCGCCAACTAGAATCGTCGACTAGTGCTGCCACTGCCACTGCGAGGGCCGTGCCTGTGGTACCTGAAGGGAAAGCGTTGGAGCTTTTGCCTGCAAATGCGAAGCATGTTTCATTGGCTGAGGACGCTATGCATGTGAGTGACGCTGCCGGTGCCACCGCACCGTGCGAGACGGCGGAAGCAGAGGTTCCCAAGCTGTTTGGGGTTTCAATTGGGCTGAAACGATGTAGGACAGAGAGCGAGAAGAGAGAGGAACAGAATCAAACTCAAACGCAGACGCAAACACAATCCTCGCAGGAACCAGATCGAGGGTCAGATTTGAAATCTGAACCGCTTGATGGCGATGACTCGGATGATCAGGACCCTCGTTGGCTGGAGCTTGGAAAATCATAA 990 0.5192 MWEKTPGLLNNTIHLYQDDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGERGLLRDIQRRKISTSATAAGAGAGATTANTVTVAVAAQPGIALSPTTSGDEQVLSSNSSPIGNTVHRTTSCTTAPELLEENERLRKENMQLSHELSQLKGLCNNIVALMSNYASGFSRQLESSTSAATATARAVPVVPEGKALELLPANAKHVSLAEDAMHVSDAAGATAPCETAEAEVPKLFGVSIGLKRCRTESEKREEQNQTQTQTQTQSSQEPDRGSDLKSEPLDGDDSDDQDPRWLELGKS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1047g00006 329 ProSitePatterns HSF-type DNA-binding domain signature. 43 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi1047g00006 329 Coils Coil 157 184 - -
Sebi1047g00006 329 MobiDBLite consensus disorder prediction 286 301 - -
Sebi1047g00006 329 PRINTS Heat shock factor (HSF) domain signature 55 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi1047g00006 329 PRINTS Heat shock factor (HSF) domain signature 42 54 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi1047g00006 329 SMART hsfneu3 7 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi1047g00006 329 Gene3D - 3 94 IPR036388 -
Sebi1047g00006 329 Pfam HSF-type DNA-binding 14 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi1047g00006 329 MobiDBLite consensus disorder prediction 277 329 - -
Sebi1047g00006 329 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 297 IPR027725 -
Sebi1047g00006 329 MobiDBLite consensus disorder prediction 129 150 - -
Sebi1047g00006 329 FunFam Heat stress transcription factor B-4 3 94 - -
Sebi1047g00006 329 SUPERFAMILY "Winged helix" DNA-binding domain 17 93 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1047g00006 Sebi-Chr1047 73524 74985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1047g00006 4 328 HSF AT4G11660 49.704 1.14e-88 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sebi1047g00006 HSF_DNA-bind 7.7e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1047g00006 K09419 - gmx:100791020 416.001