Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1047g00004 ATGGCGACGACGAGGTCCCCGAGCCGTTCCTCTGAAGACATCGTCGATTCGATACCGTTGCTAGCGAATTCTGGCGGCTCTTCCGAAGAAATCAACTCCGGGCGTCGATTCATTCAGAGACAGAGGCTTCTGCAAGCGGCGCGATTCCTCCGGCAGGCGAGTGGGCGGAGGATGATGCGTGAGCCATCGGTGGTGGTTCGAGAGGCTGCGGCGGAGCATTTGGAGGAGAGGCAGAGCGATTGGGCTTATTCGAAGCCTGTCGTCATTCTCGACATCGTTTGGAACTTCTCCTTCGTTGTTGTGGCGGCCGCCGTTTTGGTTCTGAGCCGAAGTGAAGCACCGGACATGCCTCTGAGGTTGTGGATTGCAGGATATTCTTTGCAATGCATAATTCACATGGCCTGTGTTTGCGTCGAGTACAGGAGACGGAGGCGGAACCAACGCGCCAACGCAGTCTCAGGGCAAGACAGGGTTGGCACCAGCAGTGGGAATTTGAGTTCCGTTTTAAGGGAGGGTTCTGGTTCTGGGCACTACGTGTCATTGGCGCAATTTGATGAGGAGGGTACTAGTGTTGCTAAGCATTTGGAATCAGCCAATACTATGTTTTCATTTATTTGGTGGATTATTGGGTTCTACTGGGTATCAGCCGGTGGTCAAGCTTTAGCCCAAAATTCCCCTCAGCTTTACTGGCTATGTATAATCTTCCTGGGTTTTGATGTTTTCTTTGTTGTTTTCTGTGTTGCACTAGCGTGTATCATTGGTATCGCCGTTTGCTGTTGTCTTCCGTGTATCATTGCACTTCTTTATGCAGTTGCAGATCAGGAAGGGGCATCAAAGGAAGACATTGAGCAATTGTCAAAATTCAAATTCCGAAGAGTTGAAAGTAATGAGAAACCTACTGGTAATGCACAAGGACCTGTTGGAGGAATAATGACTGAATGCCAGGCGGATTCACCTATTGAACATGTTCTTGCTGAGGAGGATGCGGAATGTTGCATCTGCCTTTCTTCTTATGACGATGGGGTTGAACTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGATAAATGGCTGTACATCAATGCTACATGCCCCCTCTGCAAGTATAACATCTTGAAAAGCAGCAACCTCGGTCAAGAGGAAGTGTAG 1161 0.4918 MATTRSPSRSSEDIVDSIPLLANSGGSSEEINSGRRFIQRQRLLQAARFLRQASGRRMMREPSVVVREAAAEHLEERQSDWAYSKPVVILDIVWNFSFVVVAAAVLVLSRSEAPDMPLRLWIAGYSLQCIIHMACVCVEYRRRRRNQRANAVSGQDRVGTSSGNLSSVLREGSGSGHYVSLAQFDEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALAQNSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRRVESNEKPTGNAQGPVGGIMTECQADSPIEHVLAEEDAECCICLSSYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSNLGQEEV 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1047g00004 386 SMART ring_2 331 371 IPR001841 -
Sebi1047g00004 386 SUPERFAMILY RING/U-box 321 378 - -
Sebi1047g00004 386 FunFam E3 ubiquitin-protein ligase At1g12760 317 382 - -
Sebi1047g00004 386 PANTHER TARGET OF ERK KINASE MPK-1 54 377 - -
Sebi1047g00004 386 Pfam Ring finger domain 330 372 IPR001841 -
Sebi1047g00004 386 ProSiteProfiles Zinc finger RING-type profile. 331 372 IPR001841 -
Sebi1047g00004 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 384 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1047g00004 Sebi-Chr1047 51046 56380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1047g00004 1 379 C3H Transcription Factor Family AT1G68070 47.382 2.86e-116 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1047g00004 - - gmx:100790497 621.313