Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1047g00003 ATGGTTAAATCACTTCAGGCAGCTAGAGTTCTTGCTAAGCTTCAAATTGGGGGAGGTGGAAAATGTGGGAAGGAAACTGGCAGAATTAAAAATAATTGCACAACTGATAATGACTCATCTGGAGGTTCAGTGGCATTAACTACACACCAGGATGTTGCTAATGGAGTGGATAAAGAAGGAAATCTCCATAAATGTGATTCTTTATTTGTTACAAAGAGAGCAGATGCTAAAGTTTGTGTGGATAGAACTTCTAGTGCTTTCAAAGTTAGTTCTTCTAAGCCTTTCTCAGGGGAGTGTTATGAGTGTTTTGGTTCTGCTGTTCCCCAAGACCCATTGCTAAGATTACACTGTCAATTTGATCCAAAGAAATTGGAGCCAGAAGCTACAAATATGGTGATAAAAGATGAAGTGCAAAAGCAGCAAGAAGGGTTGCAATTGCCAAGTTCGAGGGAGAGTATAGGCAGCCATGAGAGTTCATCAAGCAAGGGGGATAATGAGTCAAACTCCGTTGTACAGTGTGAAATCCATTGGGAAGACCTTCAATTAAGAGAAGAGATTGGACAGGGTTCTTATGCTGCCGTCTATCATGGTATTTGGAATGGATCGGATGTTGCCATCAAGGTTTACTTTGGGAATGGATACACAGAGGAGACTTTACAAGACTACAGAAAAGAGATTGATATAATGAAGAGATTGAGACACCCTAATGTATTGCTTTTCATGGGAGCAGTATATTCACAGGAGAGGCTTGCCATTGTGACAGAGTTATTACCTAGGGGAAGCCTTTTCAAAACTCTTCACAATGACAATCAGACATTAGACATCAGAAGGCGTCTAAGGATGGCTCTTGATGTTGCTAGAGGAATGAATTATCTTCATCACAGAAATCCGCCAATCGTGCATAGAGACCTAAAGTCTTCTAACCTACTTGTTGATAAAAACTGGACTGTCAAGGTTGGAGACTTTGGCTTGTCAAGGTTGAAGGATGCAACTTTGTTGACTACCAAATCTGGGAGAGGCACCCCTCAATGGATGGCCCCTGAGGTCCTTCGCAATGAACCTTCAAATGAAAAGTCTGATGTGTTCAGTTTTGGTGTCATCCTCTGGGAACTAATGACTCAATCTATTCCCTGGAAAAATTTGAATTCCTTACAGGTCGTTGGAGTCGTAGGCTTCATGGATAGAAGACTGGACCTGCCGGAGGGGCTTGACCCTAATATAGCATCAATAATAAATGATTGCTGGAGAAGTGATCCAGAACAGCGCCCGTCATTTGAAGAGCTAATACAGAGAATGATGTTTGCTCTCAACAGAGTAACAGCAGTGTCGAGTAGGAGAATTTCAGAATCATAA 1353 0.4169 MVKSLQAARVLAKLQIGGGGKCGKETGRIKNNCTTDNDSSGGSVALTTHQDVANGVDKEGNLHKCDSLFVTKRADAKVCVDRTSSAFKVSSSKPFSGECYECFGSAVPQDPLLRLHCQFDPKKLEPEATNMVIKDEVQKQQEGLQLPSSRESIGSHESSSSKGDNESNSVVQCEIHWEDLQLREEIGQGSYAAVYHGIWNGSDVAIKVYFGNGYTEETLQDYRKEIDIMKRLRHPNVLLFMGAVYSQERLAIVTELLPRGSLFKTLHNDNQTLDIRRRLRMALDVARGMNYLHHRNPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKDATLLTTKSGRGTPQWMAPEVLRNEPSNEKSDVFSFGVILWELMTQSIPWKNLNSLQVVGVVGFMDRRLDLPEGLDPNIASIINDCWRSDPEQRPSFEELIQRMMFALNRVTAVSSRRISES 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1047g00003 450 Gene3D Transferase(Phosphotransferase) domain 1 259 442 - -
Sebi1047g00003 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 299 311 IPR008271 GO:0004672|GO:0006468
Sebi1047g00003 450 SUPERFAMILY Protein kinase-like (PK-like) 169 440 IPR011009 -
Sebi1047g00003 450 MobiDBLite consensus disorder prediction 138 168 - -
Sebi1047g00003 450 SMART serkin_6 180 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1047g00003 450 PRINTS Tyrosine kinase catalytic domain signature 254 267 IPR001245 GO:0004672|GO:0006468
Sebi1047g00003 450 PRINTS Tyrosine kinase catalytic domain signature 359 381 IPR001245 GO:0004672|GO:0006468
Sebi1047g00003 450 PRINTS Tyrosine kinase catalytic domain signature 340 350 IPR001245 GO:0004672|GO:0006468
Sebi1047g00003 450 PRINTS Tyrosine kinase catalytic domain signature 293 311 IPR001245 GO:0004672|GO:0006468
Sebi1047g00003 450 PRINTS Tyrosine kinase catalytic domain signature 403 425 IPR001245 GO:0004672|GO:0006468
Sebi1047g00003 450 ProSiteProfiles Protein kinase domain profile. 180 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1047g00003 450 Pfam Protein tyrosine and serine/threonine kinase 180 431 IPR001245 GO:0004672|GO:0006468
Sebi1047g00003 450 FunFam Serine/threonine-protein kinase isoform 1 171 258 - -
Sebi1047g00003 450 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 94 432 - -
Sebi1047g00003 450 ProSitePatterns Protein kinases ATP-binding region signature. 186 207 IPR017441 GO:0005524
Sebi1047g00003 450 CDD STKc_MAP3K-like 186 432 - -
Sebi1047g00003 450 Gene3D Phosphorylase Kinase; domain 1 173 257 - -
Sebi1047g00003 450 MobiDBLite consensus disorder prediction 141 168 - -
Sebi1047g00003 450 FunFam PAS domain-containing protein tyrosine kinase family protein 258 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1047g00003 Sebi-Chr1047 33013 36465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1047g00003 154 433 MAP Kinase Kinase Kinase AT4G23050 73.214 3.12e-149 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Sebi1047g00003 PK_Tyr_Ser-Thr 2.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1047g00003 - - gmx:100813707 743.421