Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1047g00002 ATGTACAGGCAACCTGTTGCACACCCCACAAGCGGAGAGGCTCCGGCGACTTCAATGAGCGGCGAGGAGAGAGAAATCAGTGCGTACCAAGCTCTGGTGGATCGGTGTCGGAGCCTGGAGGAGAAACAAGCCAAGCTGAGGGAACAGTTCGATGAGCTGATGCAGGAGAAGAAGCTCTCAGTCAGAGACCATCAAGAGCAGGTGATCGCAGATTCAACCGCTGGTTTTCTTTCCGGTTTCTTCTTCTCTGGAAGTCCCTATGCAACCGTCTTGAAATGCATGGGCCACGCCGTTTATGTCCATACAGTTTCCTCCGGCGAGATCATATACTGGATGCTGCACTTTTTAATGAAACAGTTGCGCGCTGTAGGGAAGGGGAGGGGAATGGGATGCGTTTCTTTCGGTTGTAAGAGTGGTGTTTGTTATGTGTTCACTCAAGATAGTTTCCAACCTGAGAATGGTGGGGCTAGAAGCCTTGAACTAGAAGACCTTGTGCCTCACTTCCAGTTGATCAAGGAGGCTTTGGCATCATGTAAAACAAGCATTCCATTTGAAACTAATCGGAATCATGCGGCAGAAACTCTGTATGGATGGAAAGATTATGAAATCATTGGACAAAGAGTAACTCAGTTCCTAATTGCTGAGGAATATTATGCATCTCTGCAAAAGATTCTAGAAAGGTTGACAGCAGGAGTGCTATGGTCTGGGCAATTTCCTTTCAAGAAGAGGTCTGGTGAAGTATTTATGGCAATGGTAACAAAAACTCCCCTTTATGAGGATGGTGAGGTTGTTGGTGTTATCACTGTTTCAAGTGATGCAGCTGTATTTAACTCTATAGATTCAGGAAATCAAAGAACTTACCAATCTGGTGCCAATGGTCAACCTGGAGTACGGAGGCATCAAAGTTTCTCCCGCTCCGGCATACAGATGACACAGTTTCCAGGAATACTTCAACATGTCAAGATGATGACAAACTAG 978 0.4611 MYRQPVAHPTSGEAPATSMSGEEREISAYQALVDRCRSLEEKQAKLREQFDELMQEKKLSVRDHQEQVIADSTAGFLSGFFFSGSPYATVLKCMGHAVYVHTVSSGEIIYWMLHFLMKQLRAVGKGRGMGCVSFGCKSGVCYVFTQDSFQPENGGARSLELEDLVPHFQLIKEALASCKTSIPFETNRNHAAETLYGWKDYEIIGQRVTQFLIAEEYYASLQKILERLTAGVLWSGQFPFKKRSGEVFMAMVTKTPLYEDGEVVGVITVSSDAAVFNSIDSGNQRTYQSGANGQPGVRRHQSFSRSGIQMTQFPGILQHVKMMTN 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1047g00002 325 Coils Coil 29 59 - -
Sebi1047g00002 325 NCBIfam PAS domain S-box protein 188 272 IPR000014 -
Sebi1047g00002 325 MobiDBLite consensus disorder prediction 1 22 - -
Sebi1047g00002 325 ProSiteProfiles PAS repeat profile. 189 232 IPR000014 -
Sebi1047g00002 325 SUPERFAMILY PYP-like sensor domain (PAS domain) 188 272 IPR035965 -
Sebi1047g00002 325 CDD PAS 189 272 IPR000014 -
Sebi1047g00002 325 Gene3D PAS domain 186 275 - -
Sebi1047g00002 325 Pfam PAS domain 189 272 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1047g00002 Sebi-Chr1047 29903 32269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1047g00002 191 301 MAP Kinase Kinase Kinase AT4G23050 46.491 2.18e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1047g00002 - - gmx:100813707 187.578