Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1045g00001 ATGCCTCGCCAACTTATGCCACAGCCGCCGCAGCGGCGGAAGCCGGAGAAGCCTAGCCTTGTGGACCCCAAAATCTGGCGAGCATGCGCCGGCGCCTCCGTTCAAATCCCTGCCGTGGATTCTAGGGTTTACTACTTCCCTCAGGGCCACATGGACCAAGCCTCTTCCCCTCCGCAGAACCTTTCTCCTCTCCTACTTTCCAGGCCATTCATCCTCTGCAAAGTCTCCGCCGTTCAATTCCTCGCTGATCCACTCACCGACGAGGTCTTCGCTAAACTCCTACTCCGTCCTCTCACTAAATCCTCCGCCGCTTTGACCCGCCCTCCTCCTCCCCCCCCCGACGACGACAACAAGGTCATGTCCTACGCCAAGATTCTGACCCCTTCCGACGCCAACAACGGCGGCGGATTCTCCGTTCCGAGGTGTTGCGCCGATTCCATCTTCCCGACGCTCAATTACGAGAACGATCATCCTGTGCAGACCTTGTCCATCACCGATGTCCACGGCGAGGAATGGCAGTTCCGCCACATTTACCGCGGCACGCCGAAGAGGCACTTGCTCACCACCGGGTGGAGCACGTTCGTCAACACCAAGAATCTCGTCGCTGGAGATTCCGTGATTTTCATGAAGAACTCCTCGGAGAAGATGTTCGTGGGGATCCGCCGCGCCACGCGGTTTGCTTCGGGCTGGGACGGGGCCAGAAGTTTCATTCTCGGGGTGAGAAACAGGGTCCAGGAAGAGCACCAGCAGCAGGAAGAGAAGACGAACAAAGAGGTGTTTTCAAGGAATGGGAAGGGGAAATTGTCGGCGAAGTCGGTTGCGGAGGCAGCAGAATTGGCAGCACAGAACATGCCATTCGAAGTTGTGTACTATCCGAAGGCTGGGTGGTCGGATTTTGTGGTGAAGGCGGAGACTGTTGACGAAGCAATGATGGTTGCGTGGAGTCCCGGAATAAGAGTCAAAATGGCTGTGGAGGCAGATGATTTGACCAAGATGACATGGTTTCAGGGTGTAGTTTGTTCGGTCTCTGTTCCTCCTGATAATGTCCCTTGGCGAGGTTCTCCTTGGCGCATGCTTCAGGGAGCCAGGCATGATCTCTTTTCTGCATCAAGTTTTTCCAACTTTCCAAGTGATAAGTTTCGTCTGTGTATGGGTTATTCCTCTATGAACAACACAGTGCCAGGGTTGAAAGCTGTGTCAACAGAGCTAAATGTTGGCAGTTCTCAATCTGACGACTTGAACCCCCATAGACAGAGTAGTTTGCATTCCTCTGGCACAGAATATGTTGGGAACCACAACTGCAGCTCAACAAAACCCGTACCTGTTTCATTTCAGTTATTTGGTACAGTTATTGAGACAAATCGGCTTGCTGAAAACGGTTCCCATAATACTGGGTGCGCAGGAGATAAAAGCAGTAAGGGCGGTAATGAAAATGAAGGCATTGACAATAGACGGGATGATTCCGGCCTTTATTAG 1476 0.5298 MPRQLMPQPPQRRKPEKPSLVDPKIWRACAGASVQIPAVDSRVYYFPQGHMDQASSPPQNLSPLLLSRPFILCKVSAVQFLADPLTDEVFAKLLLRPLTKSSAALTRPPPPPPDDDNKVMSYAKILTPSDANNGGGFSVPRCCADSIFPTLNYENDHPVQTLSITDVHGEEWQFRHIYRGTPKRHLLTTGWSTFVNTKNLVAGDSVIFMKNSSEKMFVGIRRATRFASGWDGARSFILGVRNRVQEEHQQQEEKTNKEVFSRNGKGKLSAKSVAEAAELAAQNMPFEVVYYPKAGWSDFVVKAETVDEAMMVAWSPGIRVKMAVEADDLTKMTWFQGVVCSVSVPPDNVPWRGSPWRMLQGARHDLFSASSFSNFPSDKFRLCMGYSSMNNTVPGLKAVSTELNVGSSQSDDLNPHRQSSLHSSGTEYVGNHNCSSTKPVPVSFQLFGTVIETNRLAENGSHNTGCAGDKSSKGGNENEGIDNRRDDSGLY 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1045g00001 491 Gene3D - 314 366 - -
Sebi1045g00001 491 MobiDBLite consensus disorder prediction 475 491 - -
Sebi1045g00001 491 MobiDBLite consensus disorder prediction 403 434 - -
Sebi1045g00001 491 CDD B3_DNA 121 222 IPR003340 GO:0003677
Sebi1045g00001 491 MobiDBLite consensus disorder prediction 1 20 - -
Sebi1045g00001 491 Pfam Auxin response factor 276 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sebi1045g00001 491 SUPERFAMILY DNA-binding pseudobarrel domain 117 230 IPR015300 -
Sebi1045g00001 491 MobiDBLite consensus disorder prediction 458 491 - -
Sebi1045g00001 491 Pfam B3 DNA binding domain 123 223 IPR003340 GO:0003677
Sebi1045g00001 491 Gene3D - 119 224 IPR015300 -
Sebi1045g00001 491 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Sebi1045g00001 491 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 360 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sebi1045g00001 491 SMART B3_2 122 224 IPR003340 GO:0003677
Sebi1045g00001 491 FunFam Auxin response factor 120 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1045g00001 Sebi-Chr1045 803 3494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1045g00001 393 479 B3 DNA Binding Superfamily AT1G77850 38.636 6.06e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sebi1045g00001 B3 2.9e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1045g00001 - - lja:Lj1g3v0752220.1 469.159