Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1043g00007 ATGGGAAGAGTTCCTTGCTGTGACAAGAATGGTCTCAAGAAGGGCCCATGGACACCTGAGGAAGACCTTAAGCTCATCAACTACATTCAGATTCATGGACCAGGCAATTGGCGAACCCTCCCTAAAAATGCCGGTCTAGAAAGGTGTGGCAAGAGTTGCCGCCTTCGATGGACAAATTACCTGAGACCCGATATCAAGAGAGGAAGGTTCTCCTTCGAAGAAGAAGATATTATTATTCAGTTGCATAGTATCTTGGGCAACAAATGGTCAGCTATAGCAGCTAGATTGCCAGGAAGAACTGACAATGAAATAAAGAACTACTGGAACACTCACATTAGGAAGAGGCTGCTTCGAATGGGAATTGACCCTGTTACTCACGCCCCACGCCTTGACATGTCCTCTATCTTAAGGTCAATGTTGGCCAACCCGTCCCTTTTGAATGTACAAGGCTTATTGGGTAGTGCCCAAGCTGTGATGAACCAGGAATTGTTAAAGCTGGCAGCCACTGCCTCTCTTATATCAATCAAGAATGAGAACAATCCAGATTTGGCTTCACAGAATCTACAATTACAAAACCAAATGGAAATGGCCCCACCACTAGAGTTTAATCAATTTCAAATGCCTACTGAAACGACCTCCAATGTGGAAGGCTTCTCAGGCAATATGACAAACATGTGCTGTTCAAGTTCCTCATCGAATTCAACCCCTGCATATAAGGGTGAGAACCTTGTTTTGCAACAAAATCAAGTTGATGAATTGCTTGGGGACCAGGCTTTGGTTCACTCCCTAAACAATGCAAATTACCAAAACATGGGCTATGAGTATGACTCGGTTCTGTCAAGCCCAAACCAGTTGAATTCATCATCCGCGTGTGTGAACAGCAGCGTGGAGGAAGAGAAGGAAAGTTTTTGTAGTGACGTATTCAAGTTAGAAATTCCAGAGAGTGTGGATATTAGTGACTTCTTTGTTATGTCTCACTGA 981 0.4383 MGRVPCCDKNGLKKGPWTPEEDLKLINYIQIHGPGNWRTLPKNAGLERCGKSCRLRWTNYLRPDIKRGRFSFEEEDIIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHAPRLDMSSILRSMLANPSLLNVQGLLGSAQAVMNQELLKLAATASLISIKNENNPDLASQNLQLQNQMEMAPPLEFNQFQMPTETTSNVEGFSGNMTNMCCSSSSSNSTPAYKGENLVLQQNQVDELLGDQALVHSLNNANYQNMGYEYDSVLSSPNQLNSSSACVNSSVEEEKESFCSDVFKLEIPESVDISDFFVMSH 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1043g00007 326 CDD SANT 69 112 IPR001005 -
Sebi1043g00007 326 Gene3D - 13 66 - -
Sebi1043g00007 326 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 269 - -
Sebi1043g00007 326 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sebi1043g00007 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Sebi1043g00007 326 CDD SANT 16 61 IPR001005 -
Sebi1043g00007 326 SMART sant 66 114 IPR001005 -
Sebi1043g00007 326 SMART sant 13 63 IPR001005 -
Sebi1043g00007 326 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Sebi1043g00007 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Sebi1043g00007 326 FunFam Transcription factor MYB39 69 130 - -
Sebi1043g00007 326 FunFam MYB-related transcription factor 13 66 - -
Sebi1043g00007 326 Gene3D - 69 116 - -
Sebi1043g00007 326 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Sebi1043g00007 326 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sebi1043g00007 326 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1043g00007 Sebi-Chr1043 121672 123118 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1043g00007 1 323 MYB Transcription Factor Family AT4G21440 47.123 9.12e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi1043g00007 Myb_DNA-binding 3.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1043g00007 K09422 - gmx:100817731 440.654