Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1041g00008 CCAAGATCTCCTCGAAGAGTGTTACATCAAGGTATGGGAACTAAGGTCAACAGGGATGTAAGGAAGGGTGGATCACGAGTTCATAAGCGTCATCGCTTAGCAAGGCCTGAAGATTCTGATGACTCCCTTCTTGTGGATGAGTTGGACCAAGGCCCTGCGATTCCATGGGGTCGAGGTGGCAGCAGATCTGGCCCACCTTGGCTTTTTGGGGGTTTAGACATGCATGGAACAGCGGCTTGGGGATTAAATCTTGCTGCATCAGGTTGGGGTCATCAAGGTGATGCTTTGGCTACTCTAACTTCTGGGATTCAAACTGCTGGGCCAAGCTCTAAGGGAGGGGCAGATATCCAACCCTTACAGGTTGATGATAGTGTTAGCTTTGATGATATAGGTGGGCTCTCTGAATACATTGATGCTCTAAAGGAAATGGTTTTCTTTCCATTATTGTATCCAGATTTTTTTGCAAGTTACCACATAACTCCACCTAGGGGGGTGTTGTTATGTGGGCCCCCTGGCACGGGGAAAACGTTAATTGCAAGAGCTTTGGCTTGTGCTGCTTCAAAAGCTGGCCAAAAGGTTAGCTTTTACATGCGCAAAGGAGCAGATGTGCTAAGCAAGTGGGTTGGTGAGGCTGAAAGACAATTGAAATTACTCTTTGAGGAAGCACAAAGGAATCAACCTTCAATTATCTTCTTTGATGAAATAGATGGACTAGCACCTGTGAGGTCTAGTAAGCAAGAGCAAATTCACAATTCCATTGTATCCACTTTGCTTGCTTTGATGGATGGTCTTGATTCTCGTGGACAAGTTGTTTTAATTGGAGCTACCAACAGGATTGATGCTATTGATGGAGCCTTGCGACGTCCTGGTAGATTTGATCGTGAATTTAACTTTCCCTTGCCTGGTTGTGAGGCACGTGCTGAAATATTAGACATTCATACTCGTAAGTGGAAGCATCCTCCTCCAGAGGAACTGAAAAAGGAACTTGCAGCTAGTTGTGTAGGTTATTGTGGTGCTGATCTAAAGGCTCTCTGTACTGAAGCTGCCATTCGTGCTTTCCGTGAAAAATATCCACAGGTTTATACAAGTGATGACAAATTTCTCATAGATGTTGATTCTATCAGGGTAGAAAAGTATCATTTTATTGAAGCAATGTCTACAATTACTCCTGCTGCTCATAGGGGAGCTATTGTGCACTCTAGGCCATTGTCTCTAGTAGTTCAACCCTGTCTTCAGAGACATCTAGAGAAAGCCATGAGTATTATATCTGATATTTTCCATCCAGGATCTGTTGCATCAGAATTGACCAAACTTTCTATGCTTTCATACGGGTCTGCAATTCCACTTGTGTATCGGCCTAGGCTTCTACTTTGTGGTGGTGAAGGTACAGGGCTGGATCATCTTGGACCTGCGGTTTTACATGAACTTGAAAAATTTCCTGTACATTCGTTAGGACTTCCATCTCTTCTATCAGATCCTAGTGCAAAGACACCAGAGGAGGCATTGGTGCATATATTTGGTGAAGCGAGAAGAACAACACCATCAATTCTCTACTTACCGCAGTTTGATGTTTGGTGGGAAACTGCTCATGAACAGCTCAGAGCTGTTCTCCTGACTCTGCTAGAAGAATTGCCTTCTGACTTACCTATCTTACTACTCGGGACATCCTCAGTTGCACCTGCTGAAGTTGAGGAAGTGCCTACTTCAGTTTTTCCTCATCGCTCAGTTTATGAAGTGAACATGCCATCTACCAAAGATAGGACTTTGTTTTTTGACCATTTAATAGAAGCTGCTCTGTCGGTATTGTTGGAGGGAATGAACAAGAAATCCCAGGATACAGGATGCCTTTCTGAACTTCCTAAGGCACCAAAATTGGCAAGCGGTCCAAAGGTATCTGAGCTAAAAGCAAAGGTGGAGGCCGAGCAACATGCACTTCGTAGATTGCGAATGTGCCTTAGAGATGTTTGCAACCGGATATTATATGACAAGCGATTTAATGCCTTCCATTATCCAGTCTCAGATGAAGATGCACCTAATTATCGCTCAATTATACAGAACCCAATGGACATGGCTACTGTCCTGCAGCATGTTGATAATGGCCACTATATTACATGTGCTGCATTCCTGCAGGACATTGATCTCATAGTTTCCAATGCAAAGGCTTACAATGGAGAAGACTACAATGGTGCTAGGATTGTCAGTAGAGCTTGTGAGCTCCGTGATGCGGTGCATGGGATGCTCTCACAGATGGATCCAGCACTGGCTGCATACTGTGACAAGATTGCTAGTCAAGGTGGCCCAGTTCATTTGCCTGATGAATTAGGGGATTCTACATTCCCTGCTACTCCTGTTGTACAGCTGGGTACTGCTACTAGAATGAGTGCTCGACTTCGTCATGTCCAACCAGAGGTTAATATGGATCAGAGTTATGAAGCATTGAAGCGGACTAAGAAGATCGGAGATGTGCATGCAG 2473 0.4444 PRSPRRVLHQGMGTKVNRDVRKGGSRVHKRHRLARPEDSDDSLLVDELDQGPAIPWGRGGSRSGPPWLFGGLDMHGTAAWGLNLAASGWGHQGDALATLTSGIQTAGPSSKGGADIQPLQVDDSVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKHPPPEELKKELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSIRVEKYHFIEAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEKAMSIISDIFHPGSVASELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFDVWWETAHEQLRAVLLTLLEELPSDLPILLLGTSSVAPAEVEEVPTSVFPHRSVYEVNMPSTKDRTLFFDHLIEAALSVLLEGMNKKSQDTGCLSELPKAPKLASGPKVSELKAKVEAEQHALRRLRMCLRDVCNRILYDKRFNAFHYPVSDEDAPNYRSIIQNPMDMATVLQHVDNGHYITCAAFLQDIDLIVSNAKAYNGEDYNGARIVSRACELRDAVHGMLSQMDPALAAYCDKIASQGGPVHLPDELGDSTFPATPVVQLGTATRMSARLRHVQPEVNMDQSYEALKRTKKIGDVHA 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1041g00008 824 CDD Bromo_AAA 645 754 - -
Sebi1041g00008 824 Gene3D - 637 765 IPR036427 GO:0005515
Sebi1041g00008 824 Pfam AAA+ lid domain 327 364 IPR041569 -
Sebi1041g00008 824 PANTHER AAA DOMAIN-CONTAINING 2 762 IPR045199 -
Sebi1041g00008 824 FunFam ATPase family AAA domain-containing protein 2B 301 386 - -
Sebi1041g00008 824 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 449 664 IPR027417 -
Sebi1041g00008 824 MobiDBLite consensus disorder prediction 1 44 - -
Sebi1041g00008 824 PRINTS Bromodomain signature 677 693 IPR001487 GO:0005515
Sebi1041g00008 824 PRINTS Bromodomain signature 693 711 IPR001487 GO:0005515
Sebi1041g00008 824 PRINTS Bromodomain signature 711 730 IPR001487 GO:0005515
Sebi1041g00008 824 Gene3D - 424 595 IPR027417 -
Sebi1041g00008 824 ProSiteProfiles Bromodomain profile. 668 730 IPR001487 GO:0005515
Sebi1041g00008 824 FunFam ATPase family AAA domain-containing protein 637 765 - -
Sebi1041g00008 824 Gene3D - 123 393 IPR027417 -
Sebi1041g00008 824 Pfam ATPase family associated with various cellular activities (AAA) 165 300 IPR003959 GO:0005524|GO:0016887
Sebi1041g00008 824 FunFam ATPase family, AAA domain-containing 2 123 306 - -
Sebi1041g00008 824 SMART bromo_6 645 752 IPR001487 GO:0005515
Sebi1041g00008 824 SUPERFAMILY Bromodomain 643 756 IPR036427 GO:0005515
Sebi1041g00008 824 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 390 IPR027417 -
Sebi1041g00008 824 Gene3D - 301 386 - -
Sebi1041g00008 824 SMART AAA_5 161 302 IPR003593 GO:0016887
Sebi1041g00008 824 ProSitePatterns AAA-protein family signature. 270 288 IPR003960 GO:0005524|GO:0016887
Sebi1041g00008 824 Pfam Bromodomain 657 726 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1041g00008 Sebi-Chr1041 160574 164195 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1041g00008 111 365 Calmodulin-binding Proteins AT3G56690 36.293 1.97e-41 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1041g00008 K22531 - gmx:100787765 1541.94