Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1041g00004 ATGGGAAGCTGCGTTTCAACACAAGGAAAAAAAGCCCCACGCAAGAGGTCAAAGGACCTTAAAAAGCACAAGAGCCAGCGCCATGAGCCTACAACACCGACGGCGCGTAGGTCTAGCGTCACGGCGCGTCCCCTCAACGTCGTAACGAACCCGAGTCCAGGTAACATCTACGATAAGTACCAGATTGGGAAGGAGCTAGGGCGAGGAGAGTTTGGGGTGACGCACCGTTGCATTGACCTGAAAACCGGTGAGGCATTCGCGTGCAAGAAAATAGCGAAGACGAAGCTGAGGACGGAGATTGATATTCAGGATGTGAGGAGAGAGGTGCAGATCATGAGGCATTTGCCTCAACACCCTAACATTGTGTGTTTCAGAGAGGCCTTTGAGGATAAAGATGCTGTCTACCTTGTCATGGAACTTTGTGAAGGTGGTGAGCTTTTTGATAGGATTGTTGCCAAAGGCCATTACACCGAACGCGCTGCTGCTAATGTTACCAAAACCATACTTGAAGTTTGCAAGGTGTGCCATGACCATGGAGTGATACATAGGGACTTAAAACCAGAGAATTTCTTATTTGCAGATGGATCTGAGACTGCTCAATTGAAGACAATTGATTTTGGCCTTTCCACCTTCTATATGGCTGGGGAAAGATTCAGTGAAATTGTTGGAAGTCCCTATTACATGGCTCCCGAGGTTTTAAGACGTAACTATGGACCAGAAATTGATGTGTGGAGCACAGGCGTAATTCTTTATATTTTACTTTGTGGAGTTCCACCCTTTTGGGCAGAAACTGAAGAAGGGATTGCACAGGCGATAATCCGGGATACTTTAGATTTCACAAGAGATCCTTGGCCTAAAGTTTCAGAGGAAGCAAAAGACCTAGTGAAGCGTATGCTTGATCCTAATCCATACACCCGGATTACAGTTCAAGAAGTCCTTGAACATTCCTGGATACAAAATAGGGAACATGGTCGAAATGTTTCTCTTGGAGACCAGGTTAAAATGAGGATCAAACAATTCTCCTTGATGAACAGGTTCAAAAAGAAGGTTCTTAGAGTGGTGGCTGATATTTTGCCAGATGAGCAAGTTGATGGGTTTAGGCAAATGTTCGATATGATGGACAAGGACAAAAATGGACACTTGACATTTGAAGAGCTCAAAGAAGGCCTTTCAATGATTGGACATGCTATGCCTGATCCTGATGTCCAGATGTTAATGGATGCGGCAGATATTGATGGAAATGGCACCCTGAATTGTGAAGAGTTCATCACAATGAGCATTCATCTGAGAAGGATAGGAAGTGATGAGCATCTCTCTGAAGCATTCAATTACTTCGACAAGAATCAGAGTGGGTATGTTGAGTTTGAGGAATTGAAAGATGCCTTATCAGATGATGACTCAGGAGCCATTGATGACCAGGTGATCAAAGACATTCTAAATGATGTCGATTTGGATAAGGACGGTCGAATAAGTTTTGAGGAGTTTAAGGCAATGATGAAGGCAGGAGGAGATTGGAAAATGGCTTCTCGCCAGTATTCAAGAGCATTGCTAAATGCATTAAGCTTCAGGATGTTTAAGGACAAATCTGCAAATGCAACCAATTAA 1605 0.4399 MGSCVSTQGKKAPRKRSKDLKKHKSQRHEPTTPTARRSSVTARPLNVVTNPSPGNIYDKYQIGKELGRGEFGVTHRCIDLKTGEAFACKKIAKTKLRTEIDIQDVRREVQIMRHLPQHPNIVCFREAFEDKDAVYLVMELCEGGELFDRIVAKGHYTERAAANVTKTILEVCKVCHDHGVIHRDLKPENFLFADGSETAQLKTIDFGLSTFYMAGERFSEIVGSPYYMAPEVLRRNYGPEIDVWSTGVILYILLCGVPPFWAETEEGIAQAIIRDTLDFTRDPWPKVSEEAKDLVKRMLDPNPYTRITVQEVLEHSWIQNREHGRNVSLGDQVKMRIKQFSLMNRFKKKVLRVVADILPDEQVDGFRQMFDMMDKDKNGHLTFEELKEGLSMIGHAMPDPDVQMLMDAADIDGNGTLNCEEFITMSIHLRRIGSDEHLSEAFNYFDKNQSGYVEFEELKDALSDDDSGAIDDQVIKDILNDVDLDKDGRISFEEFKAMMKAGGDWKMASRQYSRALLNALSFRMFKDKSANATN 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1041g00004 534 ProSitePatterns Protein kinases ATP-binding region signature. 66 89 IPR017441 GO:0005524
Sebi1041g00004 534 ProSiteProfiles EF-hand calcium-binding domain profile. 470 505 IPR002048 GO:0005509
Sebi1041g00004 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Sebi1041g00004 534 ProSitePatterns EF-hand calcium-binding domain. 410 422 IPR018247 -
Sebi1041g00004 534 ProSiteProfiles EF-hand calcium-binding domain profile. 361 396 IPR002048 GO:0005509
Sebi1041g00004 534 Pfam EF-hand domain pair 436 500 IPR002048 GO:0005509
Sebi1041g00004 534 MobiDBLite consensus disorder prediction 1 48 - -
Sebi1041g00004 534 CDD STKc_CAMK 59 317 - -
Sebi1041g00004 534 ProSitePatterns EF-hand calcium-binding domain. 446 458 IPR018247 -
Sebi1041g00004 534 Pfam Protein kinase domain 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1041g00004 534 FunFam calcium-dependent protein kinase 13 146 326 - -
Sebi1041g00004 534 PANTHER SERINE/THREONINE-PROTEIN KINASE 54 492 - -
Sebi1041g00004 534 MobiDBLite consensus disorder prediction 32 48 - -
Sebi1041g00004 534 ProSitePatterns EF-hand calcium-binding domain. 483 495 IPR018247 -
Sebi1041g00004 534 SMART serkin_6 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1041g00004 534 SUPERFAMILY EF-hand 358 499 IPR011992 -
Sebi1041g00004 534 SUPERFAMILY Protein kinase-like (PK-like) 43 325 IPR011009 -
Sebi1041g00004 534 ProSitePatterns EF-hand calcium-binding domain. 374 386 IPR018247 -
Sebi1041g00004 534 ProSiteProfiles EF-hand calcium-binding domain profile. 397 432 IPR002048 GO:0005509
Sebi1041g00004 534 Gene3D Phosphorylase Kinase; domain 1 62 145 - -
Sebi1041g00004 534 ProSiteProfiles EF-hand calcium-binding domain profile. 433 468 IPR002048 GO:0005509
Sebi1041g00004 534 FunFam Calcium-dependent protein kinase 1 62 145 - -
Sebi1041g00004 534 SMART efh_1 437 465 IPR002048 GO:0005509
Sebi1041g00004 534 SMART efh_1 401 429 IPR002048 GO:0005509
Sebi1041g00004 534 SMART efh_1 365 393 IPR002048 GO:0005509
Sebi1041g00004 534 SMART efh_1 474 502 IPR002048 GO:0005509
Sebi1041g00004 534 Gene3D Transferase(Phosphotransferase) domain 1 146 326 - -
Sebi1041g00004 534 ProSiteProfiles Protein kinase domain profile. 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1041g00004 534 FunFam Calcium-dependent protein kinase 7 327 503 - -
Sebi1041g00004 534 Pfam EF-hand domain pair 378 425 IPR002048 GO:0005509
Sebi1041g00004 534 Gene3D - 327 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1041g00004 Sebi-Chr1041 84427 87251 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1041g00004 1 527 EF-hand Containing Proteins AT2G31500 68.972 0.0 772
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Sebi1041g00004 Pkinase 2.3e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1041g00004 K13412 - gmx:100801716 923.694