Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi1041g00003 | ATGCTACAGAAGTTTTATATATTGAGCTTCATTGCACAAAATTTTACCATCTTGAAGGAATCCGATATCCGACAAAGACAGGAAGATGACATCGCTAGAGTAGCTGCGGTTCTTTCCATATCAAAAGTTCTTGCAAGTATTCTACTTCGTCACTACAATTGGAGTGTCAGTAAAGTGCATGATGCATGGTTTGCTGATGAAGATCGAGTTCGGAAAGCAGTTGGCTTGTTGGAGAAGCCAGTTGTCCAGTATTCTCCTAATGCTAGAGAGCTTACGTGCGGCATCTGTTTTGAAAACTATCCTCGAGCCAGGATTGAAATGGCTTCTTGTGGTCATCCCTATTGTTTCTCATGCTGGGAAGGCTATATCGGCACATCCATTAATGATGGTCCTGGATGTTTGATGCTGAGGTGTCCTGATCCCACTTGTGGTGCCGCTGTTGGTCAAGATATGATTAATCTATTAGCAACCGATGAAGATAGGCAAAAATATGCTCGTTACCTTCTTAGATCTTATATTGAAGACAATAAAAAGTCAAAGTGGTGTCCTGCTCCTGGCTGTGAACATGCTGTCACTTTTGATGCTGGTAGCGGAAATTATGATGTCTCTTGCCTCTGTTCATATAGTTTTTGTTGGAATTGCACAGAGGAGGCTCATCGTCCAGTGGACTGTGGCACTGTGGCAAAGTGGATTTTGAAAAACAGTGCAGAGTCTGAAAACATGAACTGGATACTTGCTAATTCAAAGCCTTGTCCCAAGTGCAAGCGACCAATTGAAAAAAATCAAGGTTGCATGCACATGACGTGCACTCCACCCTGTAAATATGAATTTTGCTGGCTATGCGTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTTTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAGGGAGTGTATGATGATACTGAAAGAAGAAGAGAAATGGCAAAGAATTCGTTGGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAACCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACATCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACACACAGTGCCAACCTGAGTCACAGCTTAAGTTCATAACAGAGGCCTGGCTACAGATAGTTGAGTGTAGGCGAGTGCTGAAATGGACGTATGCATATGGGTACTATTTACCTGAACATGAGCATGCAAAAAAGCAGTTCTTTGAGTACCTGCAAGGTGAAGCAGAATCTGGTCTGGAGAGACTCCATCAATGTGCTGAAAAAGAACTACAGCCATTCCTCAGTACTGATGGCCCATCTGGAGAATTCAATGACTTTCGTACGAAGCTAGCTGGATTGACCAGTGTGACTAAAAACTACTTCGAGAATTTAGTGAGAGCATTAGAGAATGGTCTATCTGATGTAGATAGTAATGGAGCTGCCTTAAGCAAAGCAACAAGCTCAAAAAATGCTGCAGGGAGCAGCAAGGGGAGAGCTGGAAGAGGAAAGGGAACTTTTCGATCCAGCATGTCCAGCAGAATGTCTGATGATAGTCATTGGTATTGCGAGCACTGTACCTATGCAAATGTCAAGTCAGCCACCATATGCCAGATTTGCAATCAACAGCGCAGATGA | 1635 | 0.4312 | MLQKFYILSFIAQNFTILKESDIRQRQEDDIARVAAVLSISKVLASILLRHYNWSVSKVHDAWFADEDRVRKAVGLLEKPVVQYSPNARELTCGICFENYPRARIEMASCGHPYCFSCWEGYIGTSINDGPGCLMLRCPDPTCGAAVGQDMINLLATDEDRQKYARYLLRSYIEDNKKSKWCPAPGCEHAVTFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKYEFCWLCVGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQPFLSTDGPSGEFNDFRTKLAGLTSVTKNYFENLVRALENGLSDVDSNGAALSKATSSKNAAGSSKGRAGRGKGTFRSSMSSRMSDDSHWYCEHCTYANVKSATICQICNQQRR | 544 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi1041g00003 | 544 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 87 | 172 | IPR013083 | - | |
| Sebi1041g00003 | 544 | SUPERFAMILY | RING/U-box | 243 | 291 | - | - | |
| Sebi1041g00003 | 544 | ProSitePatterns | Zinc finger RanBP2-type signature. | 520 | 539 | IPR001876 | - | |
| Sebi1041g00003 | 544 | MobiDBLite | consensus disorder prediction | 484 | 510 | - | - | |
| Sebi1041g00003 | 544 | FunFam | RBR-type E3 ubiquitin transferase | 87 | 176 | - | - | |
| Sebi1041g00003 | 544 | CDD | Rcat_RBR_ARI7-like | 247 | 301 | - | - | |
| Sebi1041g00003 | 544 | CDD | BRcat_RBR_ANKIB1 | 169 | 233 | - | - | |
| Sebi1041g00003 | 544 | ProSiteProfiles | Zinc finger RING-type profile. | 93 | 137 | IPR001841 | - | |
| Sebi1041g00003 | 544 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 38 | 390 | IPR031127 | GO:0004842|GO:0016567 | |
| Sebi1041g00003 | 544 | SUPERFAMILY | RING/U-box | 89 | 174 | - | - | |
| Sebi1041g00003 | 544 | Gene3D | - | 220 | 475 | - | - | |
| Sebi1041g00003 | 544 | ProSiteProfiles | TRIAD supradomain profile. | 89 | 302 | IPR044066 | - | |
| Sebi1041g00003 | 544 | SMART | zf_4 | 518 | 542 | IPR001876 | - | |
| Sebi1041g00003 | 544 | Pfam | Ariadne domain | 311 | 472 | IPR045840 | - | |
| Sebi1041g00003 | 544 | SUPERFAMILY | RING/U-box | 163 | 231 | - | - | |
| Sebi1041g00003 | 544 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 516 | 544 | IPR001876 | - | |
| Sebi1041g00003 | 544 | SUPERFAMILY | Ran binding protein zinc finger-like | 516 | 543 | IPR036443 | - | |
| Sebi1041g00003 | 544 | Pfam | IBR domain, a half RING-finger domain | 162 | 224 | IPR002867 | GO:0008270 | |
| Sebi1041g00003 | 544 | Pfam | IBR domain, a half RING-finger domain | 241 | 289 | IPR002867 | GO:0008270 | |
| Sebi1041g00003 | 544 | FunFam | RBR-type E3 ubiquitin transferase | 225 | 475 | - | - | |
| Sebi1041g00003 | 544 | SMART | ibrneu5 | 162 | 224 | IPR002867 | GO:0008270 | |
| Sebi1041g00003 | 544 | SMART | ibrneu5 | 228 | 298 | IPR002867 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi1041g00003 | Sebi-Chr1041 | 74458 | 80858 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi1041g00003 | 13 | 543 | ARIADNE family | AT1G65430 | 73.258 | 0.0 | 828 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi1041g00003 | K11968 | - | gmx:100784195 | 1027.7 |