Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1040g00001 ATGAAGCCTGATAGTACCGTTTCTGGAGATAGGAAATCGCGCAAGAGACGCAGTGGTGGAAGAGGTGATTCAGTGGAAGACACTCTTGAGAAGTGGAAGAAGTATAACAGGCAGCAGCAACAACAACTTGGTACTGGAGAAAATGGGGTTCACAAAGTTCCTGCAAAAGGTTCAAGAAAAGGGTGTATGAGAGGTAAAGGTGGGCCTCAGAATTCTGATTGCAAGTTCAGGGGTGTGAGACAGAGGATTTGGGGTAAGTGGGTTGCTGAGATTCGTGAACCTATCAATGGTAAGCATGTAGGTGAGAAAGCAAATAGGCTTTGGCTTGGTACTTTCTCTACTGCACATGAAGCTGCTCTTGCTTATGATGAAGCAGCTAAGGCCATGTATGGTCCTTGTGCCCGTTTGAACTTTCCTGAGTCTGCTGTGGACTCAATGGGCTCTAATGGATCATCATCTAGTGGATGTGATAAAAAATCACCAAATGGTTGTTCTGATGACACATTGAATGGTGGTGATCTTGCAAAAGATGAGGAGATGGAGGGGAATCTTCTCCAATCTCATAATGAAAAACTCAAATTTTCTGAGGTTGGTGTCTTTGAGGAAACTGAAGAGAAAAAGGTTCTTTTTGAAGATTGTGTGGCTGATGAGTCAGTAGATGAGTTGAAGGAAGTGAAAATTGGTGTTGCTCAATGTCAAACAAATGAGAAGTGTAAGAATATAACTCATCAAGGGTCTTTCAGGAATGTTAAGCATGAAACACCTGGAGAAAATGAAGGAATAGAGAGAGAATCAGAGGTGGTTTTGAAAAACTATGACATAGATGGAGAGTGTAATCATGTGCAGAAGGATATTTCCATGAATACAAGAGCTGATTGTGGCCCTTCTGATACTGCTGAGCATGATATTCTAGTGGAAAGGGAAGAAACAAGAAGTGAATCTATGGAAACTTTGAAATCCTGTGAATTGAGCTGCAGCAATCATTGCCTTGGATACCAGCAACCTATGCTTCCATATAGCAATCCAATACCAAATTCTGAGCATTTTAACAACATCCAACCTGAGGCATCTATTGCAAAGAAACACAAGAAGGAAGTGATTTCAGAAATCCTGGAACTTTGTAGCAGCAAGTGCTCAAAGATTAGCCATGTTCAGTCACAAAATGGGCAATATAGAAATCAACATTTTGATGAGATGAAAACTGAGCTTAAAGGTTTGGAATGCAAGCTGAGAAATCATTCTATTGATTGCAACAAGAATGAAGAGGCACCAATTATAGTGGATACCAATCATTCCATGCAGGGAACTCATCTGTTTGGTGGTAGCAATGTTGAACCAATTGAAAGAATGTCAGGGGTTGAGGCTTTGAACATCAACACTAATAGAAACTCTAAATTGCATGAGAAAGGAAACAATGGAAATGCACTTCCTGGATTTAGTTCAGGGCAGAATAGGAAGCTGTGTGATCTTTCTCAACAACTACAGAAACTGGGTGGTTACCTGCCTGAAAATTGGAATAATATGCAGTTTGCAGAACTGGAAGTAGGTTATGATTATAGTTTCTTAAATCCTGATTATGATTTTGGCTTATTGGAAGAGAAGAAGTTACTAGATGTATGTTTTTCACACATAGGGTCTTAG 1641 0.4016 MKPDSTVSGDRKSRKRRSGGRGDSVEDTLEKWKKYNRQQQQQLGTGENGVHKVPAKGSRKGCMRGKGGPQNSDCKFRGVRQRIWGKWVAEIREPINGKHVGEKANRLWLGTFSTAHEAALAYDEAAKAMYGPCARLNFPESAVDSMGSNGSSSSGCDKKSPNGCSDDTLNGGDLAKDEEMEGNLLQSHNEKLKFSEVGVFEETEEKKVLFEDCVADESVDELKEVKIGVAQCQTNEKCKNITHQGSFRNVKHETPGENEGIERESEVVLKNYDIDGECNHVQKDISMNTRADCGPSDTAEHDILVEREETRSESMETLKSCELSCSNHCLGYQQPMLPYSNPIPNSEHFNNIQPEASIAKKHKKEVISEILELCSSKCSKISHVQSQNGQYRNQHFDEMKTELKGLECKLRNHSIDCNKNEEAPIIVDTNHSMQGTHLFGGSNVEPIERMSGVEALNINTNRNSKLHEKGNNGNALPGFSSGQNRKLCDLSQQLQKLGGYLPENWNNMQFAELEVGYDYSFLNPDYDFGLLEEKKLLDVCFSHIGS 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1040g00001 546 MobiDBLite consensus disorder prediction 1 74 - -
Sebi1040g00001 546 FunFam Ethylene-responsive transcription factor 2 74 140 - -
Sebi1040g00001 546 MobiDBLite consensus disorder prediction 1 34 - -
Sebi1040g00001 546 MobiDBLite consensus disorder prediction 144 167 - -
Sebi1040g00001 546 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 11 316 - -
Sebi1040g00001 546 MobiDBLite consensus disorder prediction 144 175 - -
Sebi1040g00001 546 Pfam AP2 domain 74 131 IPR001471 GO:0003700|GO:0006355
Sebi1040g00001 546 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Sebi1040g00001 546 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Sebi1040g00001 546 SUPERFAMILY DNA-binding domain 75 140 IPR016177 GO:0003677
Sebi1040g00001 546 SMART rav1_2 75 145 IPR001471 GO:0003700|GO:0006355
Sebi1040g00001 546 CDD AP2 74 141 IPR001471 GO:0003700|GO:0006355
Sebi1040g00001 546 ProSiteProfiles AP2/ERF domain profile. 75 139 IPR001471 GO:0003700|GO:0006355
Sebi1040g00001 546 Coils Coil 396 416 - -
Sebi1040g00001 546 Gene3D AP2/ERF domain 74 141 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1040g00001 Sebi-Chr1040 42445 44322 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1040g00001 14 217 AP2-EREBP Transcription Factor Family AT2G40340 44.976 2.79e-42 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi1040g00001 AP2 9.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1040g00001 - - aprc:113861479 711.449