Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi103g00023 ATGCTCATAGTTGAGCACTTGAGTGTAGTTGCCTGGAGTGTTGCATTACCTGGTATTGCTGATGCCAATAGCTGCTATTATTCTCTCTCATCTCTCCTAAACCCTAAATGCCCCAAAATCCCTTCAACCATGTCTATTAGCTCTTCTCAGGTAAAATTGTTCTTGTCTGAGGATTACCCCTCAAAAGTTGGCCAGAAATTGCCAGATCATCTTCAAGCAAAGATATCATCAACATTACACTCTAGTACTAATGAATCTGATGATTTGCCCCCTGGGTTTGAAAGCAGTCATTTCCTGAACCGACGGAAGGTTGAATTCTCCCACATTTCCCAGATAAAATGGGAACGTCCTCCCCGGCTTGTTTTCAGTTCTCACTGGCGTGTTGCAGCTGGTGAAGAAAGTAGGGAGAGAGAGGCTCAGAAGCTGAGAGAAATGAAAGTGCTTGAAGCAGTTTATCCCCGTATTTCTGCCATTCCTCCTAGCCCTTCTGTTTCCTTGGATGTAGAAGAGGAAGATTATGATGATAACATTACTCCTCTCGTCTCTATCATTCCCATTGAGGAGGAAGAGTCTATCAATTCCGTAACATTACCCCACAATGTGCAGTCACAGAACTTGCAGCAATATATATCAGCAATGACTCCAATTAGTTCAGACTGCAACACCTCCCATACTGTTTCCTTTGATGCCTGTGGAGCGCTCATATCTGGGGGGGTATCTCTTGGTTCGGAAGCAGACTTAGCAGCAGCTTCAGCTATTGTAGCAGCCATCGTGAAGAGTAATGAGCAAGGGAGGTTAGTAGATATGGATCTACTGGTTGAAATATTTAATGACCCAAAAATGATTGAGAAATTGACTAAAGAAAATAGAATTGCAACCACCACTGTAAGTGCATCCTCAAAAGCTGTGGATATACCCTCTTCTGGATCAAAACCTGCTATTCCATCCGTTTCATTGTTGAATCCTACACCTGATAAGCCAGCAACTGCATCAGTTCCATTGTCTAGGCCTGTGTCTGGTAAACCAGTATCTCCCTCAGTTTTGCTGCCTACTGTTACACCTGCACCTCACATGCTCAGGTCTGTCAACAATAATATTCACCATGTGTCAAATGGAATACCAACTGCTTTAAATACCCAGCCTCGGCAAGATACAGTTCTGGCTTCCGGAGTGAAGCGAGCTGCATCATTGCCCTCCATAGCTTCTAGTGAGCTAAGCTCTGTTACATTGCCTTCTGCTACTGGGAACTTGCATACTGTTGTGAATCAGGGGCAATCCACTGCTAGTACAATGCCTCCTTACCAACTAAACACAGGTTCAGAATGTGCTGTAAAGGATGCCAACTATTATAAAAACCTCGTTAGGCAACATGGTGCAGATAAGCAGGACTCACAAATAGGTATCCGTCATAGTAACTTCCAAGATTTGAAACCAGTACATAACATTAACAAAGGAGAAGTGAAACACAAAATCCAGAAACCATGCATATACTTTAAAAGCTCAAGGGGGTGCCGAAATGGTAACAATTGCCCCTATCAGCATGATGTATCAGTTCACTGGGGAGCTGAACTTGGAAACAGGGAGGAGGATGAAAGGAGACGGAGTGAGGAAGAGTGGGATATCAGTTTTATAGGTTTACCAATTTCTCTGGTTGTGCTTGGAATTGGTGGCCGGATTTTGATATGA 1686 0.4353 MLIVEHLSVVAWSVALPGIADANSCYYSLSSLLNPKCPKIPSTMSISSSQVKLFLSEDYPSKVGQKLPDHLQAKISSTLHSSTNESDDLPPGFESSHFLNRRKVEFSHISQIKWERPPRLVFSSHWRVAAGEESREREAQKLREMKVLEAVYPRISAIPPSPSVSLDVEEEDYDDNITPLVSIIPIEEEESINSVTLPHNVQSQNLQQYISAMTPISSDCNTSHTVSFDACGALISGGVSLGSEADLAAASAIVAAIVKSNEQGRLVDMDLLVEIFNDPKMIEKLTKENRIATTTVSASSKAVDIPSSGSKPAIPSVSLLNPTPDKPATASVPLSRPVSGKPVSPSVLLPTVTPAPHMLRSVNNNIHHVSNGIPTALNTQPRQDTVLASGVKRAASLPSIASSELSSVTLPSATGNLHTVVNQGQSTASTMPPYQLNTGSECAVKDANYYKNLVRQHGADKQDSQIGIRHSNFQDLKPVHNINKGEVKHKIQKPCIYFKSSRGCRNGNNCPYQHDVSVHWGAELGNREEDERRRSEEEWDISFIGLPISLVVLGIGGRILI 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi103g00023 561 ProSiteProfiles Zinc finger C3H1-type profile. 490 517 IPR000571 GO:0046872
Sebi103g00023 561 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 49 527 - -
Sebi103g00023 561 MobiDBLite consensus disorder prediction 296 342 - -
Sebi103g00023 561 MobiDBLite consensus disorder prediction 296 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi103g00023 Sebi-Chr103 762536 764839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi103g00023 111 181 Homeobox Transcription Factor Family AT4G02560 39.437 1.05e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi103g00023 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi103g00023 - - gmx:102661587 582.793